miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 3' -56 NC_004812.1 + 55307 0.66 0.899294
Target:  5'- -gGUGGGCU-CGgcgcgGGCCGaCGCccgGGCGu -3'
miRNA:   3'- ggUACUUGAaGCa----CCGGC-GCGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 111686 0.66 0.899294
Target:  5'- gUCGUcGGCgaCGUGGCCGC--UGGCGa -3'
miRNA:   3'- -GGUAcUUGaaGCACCGGCGcgACCGC- -5'
21551 3' -56 NC_004812.1 + 5997 0.66 0.899294
Target:  5'- cCCcgGAACgcgCGUcGG-CGCGC-GGCGg -3'
miRNA:   3'- -GGuaCUUGaa-GCA-CCgGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 128148 0.66 0.899294
Target:  5'- -gAUGGACcgCGgaccgGGUCGCGC-GGCGc -3'
miRNA:   3'- ggUACUUGaaGCa----CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 108670 0.66 0.899294
Target:  5'- uCCggGAACgcgCGccgGGCCGgcCGCUGGUa -3'
miRNA:   3'- -GGuaCUUGaa-GCa--CCGGC--GCGACCGc -5'
21551 3' -56 NC_004812.1 + 141961 0.67 0.895426
Target:  5'- uCCggGAGCUggCGgagcaccggcuggaGGCCGCGCgGGUGc -3'
miRNA:   3'- -GGuaCUUGAa-GCa-------------CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 85380 0.67 0.892801
Target:  5'- gCCGagcUGuGCUUCGggcgcccgggGGCCGCGUuccucuaccUGGCGu -3'
miRNA:   3'- -GGU---ACuUGAAGCa---------CCGGCGCG---------ACCGC- -5'
21551 3' -56 NC_004812.1 + 15314 0.67 0.892801
Target:  5'- cCCGUGAug--CGcaGGCCGCGCgagGGgGa -3'
miRNA:   3'- -GGUACUugaaGCa-CCGGCGCGa--CCgC- -5'
21551 3' -56 NC_004812.1 + 87876 0.67 0.892801
Target:  5'- aUCAUGGccguGCUgCGgaugaaGGgCGUGCUGGCGg -3'
miRNA:   3'- -GGUACU----UGAaGCa-----CCgGCGCGACCGC- -5'
21551 3' -56 NC_004812.1 + 24854 0.67 0.892801
Target:  5'- gCCGcGGGCggCGcGGCUGCGggGGCGu -3'
miRNA:   3'- -GGUaCUUGaaGCaCCGGCGCgaCCGC- -5'
21551 3' -56 NC_004812.1 + 37159 0.67 0.892801
Target:  5'- gCCGUGGug--CGcucGGCCGCGUUGuGCGc -3'
miRNA:   3'- -GGUACUugaaGCa--CCGGCGCGAC-CGC- -5'
21551 3' -56 NC_004812.1 + 116194 0.67 0.892801
Target:  5'- gCCGUGGcggGCUacuacgCGgccUGGCuCGCGCgGGCGg -3'
miRNA:   3'- -GGUACU---UGAa-----GC---ACCG-GCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 104280 0.67 0.892801
Target:  5'- cUCAaGAGCgaCG-GGCCGuCGCcGGCGg -3'
miRNA:   3'- -GGUaCUUGaaGCaCCGGC-GCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 43310 0.67 0.892801
Target:  5'- gCCAcGAACUgCGUGccGCCGaaggGCUGGUGc -3'
miRNA:   3'- -GGUaCUUGAaGCAC--CGGCg---CGACCGC- -5'
21551 3' -56 NC_004812.1 + 16220 0.67 0.892801
Target:  5'- -gGUGGugUcCGUGGCgaGCGC-GGCGu -3'
miRNA:   3'- ggUACUugAaGCACCGg-CGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 113509 0.67 0.886084
Target:  5'- uUCGUGGAggcCGUGGCCucggcggacgaGaCGCUGGCGu -3'
miRNA:   3'- -GGUACUUgaaGCACCGG-----------C-GCGACCGC- -5'
21551 3' -56 NC_004812.1 + 26257 0.67 0.886084
Target:  5'- aCcgGGAC-UCGggggacgcGGCCGCGCgGGUGc -3'
miRNA:   3'- gGuaCUUGaAGCa-------CCGGCGCGaCCGC- -5'
21551 3' -56 NC_004812.1 + 137611 0.67 0.886084
Target:  5'- -gGUGAuCUUCGaggcGGCCGUGCacacGGCGu -3'
miRNA:   3'- ggUACUuGAAGCa---CCGGCGCGa---CCGC- -5'
21551 3' -56 NC_004812.1 + 136480 0.67 0.879146
Target:  5'- gCCAUGGGCgacgCG-GGCCuCGUcugGGCGg -3'
miRNA:   3'- -GGUACUUGaa--GCaCCGGcGCGa--CCGC- -5'
21551 3' -56 NC_004812.1 + 129002 0.67 0.879146
Target:  5'- gCCcgGAGCUUCGgcgGGuCCGgggGCUacGGCGa -3'
miRNA:   3'- -GGuaCUUGAAGCa--CC-GGCg--CGA--CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.