miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 152502 0.66 0.871709
Target:  5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3'
miRNA:   3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 145170 0.66 0.878933
Target:  5'- --aACgGGCACGUGCACG-CCUGg-- -3'
miRNA:   3'- gggUGgUCGUGUACGUGCuGGACgag -5'
21551 5' -56.5 NC_004812.1 + 52315 0.66 0.871709
Target:  5'- cCCCGCCGucGCccGCcgGCgACGGCCcgucGCUCu -3'
miRNA:   3'- -GGGUGGU--CG--UGuaCG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 59451 0.66 0.87822
Target:  5'- aCCCGCUcggucgcGGCGCG-GUACGucuCCUGCa- -3'
miRNA:   3'- -GGGUGG-------UCGUGUaCGUGCu--GGACGag -5'
21551 5' -56.5 NC_004812.1 + 20988 0.66 0.878933
Target:  5'- cUCCAgCAGCACcagGUGCACGaagcGCgUGCg- -3'
miRNA:   3'- -GGGUgGUCGUG---UACGUGC----UGgACGag -5'
21551 5' -56.5 NC_004812.1 + 130142 0.66 0.885936
Target:  5'- gCCCACacgGGCGCggGCGCG-CCgGCg- -3'
miRNA:   3'- -GGGUGg--UCGUGuaCGUGCuGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 18772 0.66 0.872441
Target:  5'- gUCGCCAGCGCcaggaccucccgggGCcagGgGGCCUGCUCc -3'
miRNA:   3'- gGGUGGUCGUGua------------CG---UgCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 83162 0.66 0.864271
Target:  5'- aCCCcCUGGCGCcguggcGCGCGGCCccggaGCUCg -3'
miRNA:   3'- -GGGuGGUCGUGua----CGUGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 92774 0.66 0.871709
Target:  5'- gCCCACCAGCA---GCGaGuCCUGCa- -3'
miRNA:   3'- -GGGUGGUCGUguaCGUgCuGGACGag -5'
21551 5' -56.5 NC_004812.1 + 148907 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 89982 0.66 0.864271
Target:  5'- uCCCGCUucGCcCGUGCcgACGGCCUGggCg -3'
miRNA:   3'- -GGGUGGu-CGuGUACG--UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 81175 0.66 0.899265
Target:  5'- aCC-CCGGCACGUGCucccccgccaGCaGCCUGgaCg -3'
miRNA:   3'- gGGuGGUCGUGUACG----------UGcUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 59962 0.66 0.864271
Target:  5'- gCCCACggggucgcgCGGCGCcgGCucgugGCGGCCguggUGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGUGuaCG-----UGCUGG----ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 77214 0.66 0.864271
Target:  5'- cCCCgaGCCAGCug--GCGCGGCCgacGCg- -3'
miRNA:   3'- -GGG--UGGUCGuguaCGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 27078 0.66 0.864271
Target:  5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3'
miRNA:   3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 33390 0.66 0.892715
Target:  5'- gCCGCgGgucgugacGCACAcgaacGCgACGGCCUGCUCc -3'
miRNA:   3'- gGGUGgU--------CGUGUa----CG-UGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 69442 0.66 0.899265
Target:  5'- gCCgCACgCGGCGCAUccucugucGCGCGGCCgaGCa- -3'
miRNA:   3'- -GG-GUG-GUCGUGUA--------CGUGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 69908 0.66 0.899265
Target:  5'- cUCCACCccgAGCGCAUccaggcGCugGGgCUGCg- -3'
miRNA:   3'- -GGGUGG---UCGUGUA------CGugCUgGACGag -5'
21551 5' -56.5 NC_004812.1 + 141806 0.66 0.892715
Target:  5'- uUCCGCU-GCGCAUccucccCGCGGCCUGcCUCc -3'
miRNA:   3'- -GGGUGGuCGUGUAc-----GUGCUGGAC-GAG- -5'
21551 5' -56.5 NC_004812.1 + 58013 0.66 0.871709
Target:  5'- cCCCGCCcucGGCGaugAUGcCGCGcAgCUGCUCg -3'
miRNA:   3'- -GGGUGG---UCGUg--UAC-GUGC-UgGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.