miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 76606 0.66 0.87822
Target:  5'- cCCCACCuuucuggAGUACccguccgGaCGCGGCCUGCg- -3'
miRNA:   3'- -GGGUGG-------UCGUGua-----C-GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 26993 0.66 0.871709
Target:  5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3'
miRNA:   3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 93065 0.66 0.864271
Target:  5'- cCCUGCCGGC-CGgaccCACGACCcuggaGCUCg -3'
miRNA:   3'- -GGGUGGUCGuGUac--GUGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 152587 0.66 0.864271
Target:  5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3'
miRNA:   3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 101981 0.66 0.864271
Target:  5'- gCCCGCCGcccGCGCGgggggucGCGCGACUcGCg- -3'
miRNA:   3'- -GGGUGGU---CGUGUa------CGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 145778 0.66 0.864271
Target:  5'- cCCCAUCGGCGug-GCcgaaGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGUguaCGug--CUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 113952 0.66 0.871709
Target:  5'- gCCCcCCuGUACGUGCACGGCaaauacuuuuaUUGCa- -3'
miRNA:   3'- -GGGuGGuCGUGUACGUGCUG-----------GACGag -5'
21551 5' -56.5 NC_004812.1 + 7755 0.66 0.871709
Target:  5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3'
miRNA:   3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 23168 0.66 0.871709
Target:  5'- gCC-CUGGCGCAcaccgUGUACGugCUGCa- -3'
miRNA:   3'- gGGuGGUCGUGU-----ACGUGCugGACGag -5'
21551 5' -56.5 NC_004812.1 + 23786 0.66 0.871709
Target:  5'- gCCAuCCGaCGCGUGCGCGGCUccaUGCg- -3'
miRNA:   3'- gGGU-GGUcGUGUACGUGCUGG---ACGag -5'
21551 5' -56.5 NC_004812.1 + 2976 0.66 0.864271
Target:  5'- cCCCGCCcGCccGCAUGgGCGGCCcGUc- -3'
miRNA:   3'- -GGGUGGuCG--UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 92724 0.66 0.864271
Target:  5'- uUCUGCC-GCugGgGCGCGAgCUGUUCa -3'
miRNA:   3'- -GGGUGGuCGugUaCGUGCUgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 60035 0.66 0.878933
Target:  5'- aCCAgCCGGCAgGUGUACucGCUgUGCUCg -3'
miRNA:   3'- gGGU-GGUCGUgUACGUGc-UGG-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 116884 0.66 0.885936
Target:  5'- uCCgACCAGaacaGCcUGUACGACgUGCa- -3'
miRNA:   3'- -GGgUGGUCg---UGuACGUGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 53042 0.66 0.885246
Target:  5'- gCgCGCCAGCACGcggcagcUGCACcGCCaggcggcGCUCa -3'
miRNA:   3'- -GgGUGGUCGUGU-------ACGUGcUGGa------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 48983 0.66 0.878933
Target:  5'- gCCCACC-GCGCcaaaAUGCGCcGCCUgGCg- -3'
miRNA:   3'- -GGGUGGuCGUG----UACGUGcUGGA-CGag -5'
21551 5' -56.5 NC_004812.1 + 47308 0.66 0.892715
Target:  5'- gCCGCCGGCGC--GUACGugCggGCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCugGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 148907 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 133101 0.66 0.892715
Target:  5'- cCCCAgCAGCACccGCACGuagUGCg- -3'
miRNA:   3'- -GGGUgGUCGUGuaCGUGCuggACGag -5'
21551 5' -56.5 NC_004812.1 + 38942 0.66 0.885936
Target:  5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3'
miRNA:   3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.