Results 81 - 100 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21551 | 5' | -56.5 | NC_004812.1 | + | 33390 | 0.66 | 0.892715 |
Target: 5'- gCCGCgGgucgugacGCACAcgaacGCgACGGCCUGCUCc -3' miRNA: 3'- gGGUGgU--------CGUGUa----CG-UGCUGGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 62684 | 0.66 | 0.885936 |
Target: 5'- gUCGCCGuGCACGUGUACGGCaC-GCg- -3' miRNA: 3'- gGGUGGU-CGUGUACGUGCUG-GaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 8041 | 0.66 | 0.885936 |
Target: 5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3' miRNA: 3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 103152 | 0.66 | 0.883161 |
Target: 5'- gCCCGCUgcgucuggAGCGCGggggccgccgucaGCGCGGCCccggGCUCc -3' miRNA: 3'- -GGGUGG--------UCGUGUa------------CGUGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 91166 | 0.66 | 0.878933 |
Target: 5'- aCUCGCgCAGCACGUcgucCACGcucGCCUGCg- -3' miRNA: 3'- -GGGUG-GUCGUGUAc---GUGC---UGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 20988 | 0.66 | 0.878933 |
Target: 5'- cUCCAgCAGCACcagGUGCACGaagcGCgUGCg- -3' miRNA: 3'- -GGGUgGUCGUG---UACGUGC----UGgACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 73265 | 0.66 | 0.878933 |
Target: 5'- gCCGCCAGCA---GCGCGuCCagGCUg -3' miRNA: 3'- gGGUGGUCGUguaCGUGCuGGa-CGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 145170 | 0.66 | 0.878933 |
Target: 5'- --aACgGGCACGUGCACG-CCUGg-- -3' miRNA: 3'- gggUGgUCGUGUACGUGCuGGACgag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 5795 | 0.66 | 0.878933 |
Target: 5'- gCCCGCCucgggcugcggGGCuGCGggGCGCGGCggGCUCu -3' miRNA: 3'- -GGGUGG-----------UCG-UGUa-CGUGCUGgaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 37612 | 0.66 | 0.878933 |
Target: 5'- aCCCGgCAGUcCcgGUGCGCGuCCagcUGCUCg -3' miRNA: 3'- -GGGUgGUCGuG--UACGUGCuGG---ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 142305 | 0.66 | 0.878933 |
Target: 5'- cCCCggGCCGGCGCGgcgggGCGCGcCCUaCUg -3' miRNA: 3'- -GGG--UGGUCGUGUa----CGUGCuGGAcGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 145305 | 0.66 | 0.878933 |
Target: 5'- cCCCGCCccgcGGCGCcccGCGCGGCgCgccucgugggcgUGCUCg -3' miRNA: 3'- -GGGUGG----UCGUGua-CGUGCUG-G------------ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 87580 | 0.66 | 0.885936 |
Target: 5'- -aCGCCcGC-CAUGCugGGCCUGg-- -3' miRNA: 3'- ggGUGGuCGuGUACGugCUGGACgag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 75676 | 0.67 | 0.848772 |
Target: 5'- cCCCGCCGGC-C-UGCGCGAgguCCaGCa- -3' miRNA: 3'- -GGGUGGUCGuGuACGUGCU---GGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 111194 | 0.67 | 0.856623 |
Target: 5'- gCCUACgGGCugGUGCuCGGCUgguacgucgUGUUCg -3' miRNA: 3'- -GGGUGgUCGugUACGuGCUGG---------ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 110261 | 0.67 | 0.856623 |
Target: 5'- cCCCGCgGuGCACGUGCGCcaagaagaucGGCCUGa-- -3' miRNA: 3'- -GGGUGgU-CGUGUACGUG----------CUGGACgag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 75722 | 0.67 | 0.840725 |
Target: 5'- uCUCACgAGC-CG-GCGCGACCUGggCg -3' miRNA: 3'- -GGGUGgUCGuGUaCGUGCUGGACgaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 120490 | 0.67 | 0.840725 |
Target: 5'- gCCUcCCAGCGCuucucGUACGgggACCUGCUg -3' miRNA: 3'- -GGGuGGUCGUGua---CGUGC---UGGACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 150128 | 0.67 | 0.840725 |
Target: 5'- cCCCuuGCCuGUACccGCAgGGCCcGCUCc -3' miRNA: 3'- -GGG--UGGuCGUGuaCGUgCUGGaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 12227 | 0.67 | 0.840725 |
Target: 5'- gCCGCCAGCA---GCACGGgCUcGCUg -3' miRNA: 3'- gGGUGGUCGUguaCGUGCUgGA-CGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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