miRNA display CGI


Results 101 - 120 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 66131 0.67 0.856623
Target:  5'- gCCGCCGccGCGCAggauggugUGCACGAagaaCaGCUCg -3'
miRNA:   3'- gGGUGGU--CGUGU--------ACGUGCUg---GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 153529 0.67 0.848772
Target:  5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3'
miRNA:   3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 86882 0.67 0.848772
Target:  5'- -aCGCCGGCAa--GCGCGACCccagccUGCUg -3'
miRNA:   3'- ggGUGGUCGUguaCGUGCUGG------ACGAg -5'
21551 5' -56.5 NC_004812.1 + 55379 0.67 0.856623
Target:  5'- gCCCgucgagGCCGGCGCG-GCGCc-CCUGCUg -3'
miRNA:   3'- -GGG------UGGUCGUGUaCGUGcuGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 53217 0.67 0.856623
Target:  5'- gUCUACgcggagCAGguCAUGCGCcagGACCUGUUCg -3'
miRNA:   3'- -GGGUG------GUCguGUACGUG---CUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28020 0.67 0.848772
Target:  5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3'
miRNA:   3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 131769 0.67 0.814605
Target:  5'- gCCGCCcgcGGCGCGUGCcGCGAuccgggggucgauCCUGCcCg -3'
miRNA:   3'- gGGUGG---UCGUGUACG-UGCU-------------GGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 4898 0.67 0.815474
Target:  5'- gCCACggCGGCGCGcGCGCG-CCgccGCUCg -3'
miRNA:   3'- gGGUG--GUCGUGUaCGUGCuGGa--CGAG- -5'
21551 5' -56.5 NC_004812.1 + 3957 0.67 0.848772
Target:  5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3'
miRNA:   3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 106042 0.67 0.848772
Target:  5'- gCCGCCGGCGCucgGCcACGAg--GCUCc -3'
miRNA:   3'- gGGUGGUCGUGua-CG-UGCUggaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 59933 0.67 0.856623
Target:  5'- gCCCACUcgAGCGCgGUGguC-ACCUGCUg -3'
miRNA:   3'- -GGGUGG--UCGUG-UACguGcUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 58692 0.67 0.848772
Target:  5'- gCCGCCcucAGCGcCAUGC-UGACCaaGCUCa -3'
miRNA:   3'- gGGUGG---UCGU-GUACGuGCUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 75080 0.67 0.840725
Target:  5'- cUCCGCCAcCGa--GCGCG-CCUGCUCc -3'
miRNA:   3'- -GGGUGGUcGUguaCGUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28785 0.67 0.840725
Target:  5'- cCCCGCUcuuuucGGC-CGUgGCGCGgcGCCUGCUg -3'
miRNA:   3'- -GGGUGG------UCGuGUA-CGUGC--UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 39703 0.67 0.847976
Target:  5'- cCCCAgCAGCGCGucgaacUGCACGucguacaGgCUGUUCu -3'
miRNA:   3'- -GGGUgGUCGUGU------ACGUGC-------UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 69125 0.67 0.848772
Target:  5'- -gCugCGGCuCAUGCGCGACUggGCg- -3'
miRNA:   3'- ggGugGUCGuGUACGUGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 19396 0.67 0.848772
Target:  5'- -gCACCAggacGCGCGcgGuCACGGCCUGCg- -3'
miRNA:   3'- ggGUGGU----CGUGUa-C-GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 129465 0.67 0.848772
Target:  5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3'
miRNA:   3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 47325 0.67 0.848772
Target:  5'- aCCGCCAGCAagcGCgagcaacggGCGACCggGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCG---------UGCUGGa-CGAg -5'
21551 5' -56.5 NC_004812.1 + 75676 0.67 0.848772
Target:  5'- cCCCGCCGGC-C-UGCGCGAgguCCaGCa- -3'
miRNA:   3'- -GGGUGGUCGuGuACGUGCU---GGaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.