miRNA display CGI


Results 121 - 140 of 318 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 41931 0.67 0.832488
Target:  5'- gCCC-CgGGCGCGcccgGCAcCGGCCcGCUCu -3'
miRNA:   3'- -GGGuGgUCGUGUa---CGU-GCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 120490 0.67 0.840725
Target:  5'- gCCUcCCAGCGCuucucGUACGgggACCUGCUg -3'
miRNA:   3'- -GGGuGGUCGUGua---CGUGC---UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 150128 0.67 0.840725
Target:  5'- cCCCuuGCCuGUACccGCAgGGCCcGCUCc -3'
miRNA:   3'- -GGG--UGGuCGUGuaCGUgCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 63946 0.67 0.840725
Target:  5'- aCgGCCAGCagauccGCGUGUACacguGCCUGCUg -3'
miRNA:   3'- gGgUGGUCG------UGUACGUGc---UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 103376 0.67 0.840725
Target:  5'- gCCCucgaaCAGguCcuggcGCAUGACCUGCUCc -3'
miRNA:   3'- -GGGug---GUCguGua---CGUGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 111194 0.67 0.856623
Target:  5'- gCCUACgGGCugGUGCuCGGCUgguacgucgUGUUCg -3'
miRNA:   3'- -GGGUGgUCGugUACGuGCUGG---------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 82726 0.67 0.856623
Target:  5'- gCCCGagcCCAGCAgGgcgGCaACGGCCgGCUg -3'
miRNA:   3'- -GGGU---GGUCGUgUa--CG-UGCUGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 73724 0.67 0.856623
Target:  5'- gCCACCAGCGCcacCAUGACgUcGUUCa -3'
miRNA:   3'- gGGUGGUCGUGuacGUGCUGgA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 66131 0.67 0.856623
Target:  5'- gCCGCCGccGCGCAggauggugUGCACGAagaaCaGCUCg -3'
miRNA:   3'- gGGUGGU--CGUGU--------ACGUGCUg---GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 153529 0.67 0.848772
Target:  5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3'
miRNA:   3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 86882 0.67 0.848772
Target:  5'- -aCGCCGGCAa--GCGCGACCccagccUGCUg -3'
miRNA:   3'- ggGUGGUCGUguaCGUGCUGG------ACGAg -5'
21551 5' -56.5 NC_004812.1 + 75676 0.67 0.848772
Target:  5'- cCCCGCCGGC-C-UGCGCGAgguCCaGCa- -3'
miRNA:   3'- -GGGUGGUCGuGuACGUGCU---GGaCGag -5'
21551 5' -56.5 NC_004812.1 + 47325 0.67 0.848772
Target:  5'- aCCGCCAGCAagcGCgagcaacggGCGACCggGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCG---------UGCUGGa-CGAg -5'
21551 5' -56.5 NC_004812.1 + 129465 0.67 0.848772
Target:  5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3'
miRNA:   3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 19396 0.67 0.848772
Target:  5'- -gCACCAggacGCGCGcgGuCACGGCCUGCg- -3'
miRNA:   3'- ggGUGGU----CGUGUa-C-GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 69125 0.67 0.848772
Target:  5'- -gCugCGGCuCAUGCGCGACUggGCg- -3'
miRNA:   3'- ggGugGUCGuGUACGUGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 39703 0.67 0.847976
Target:  5'- cCCCAgCAGCGCGucgaacUGCACGucguacaGgCUGUUCu -3'
miRNA:   3'- -GGGUgGUCGUGU------ACGUGC-------UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28785 0.67 0.840725
Target:  5'- cCCCGCUcuuuucGGC-CGUgGCGCGgcGCCUGCUg -3'
miRNA:   3'- -GGGUGG------UCGuGUA-CGUGC--UGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 75080 0.67 0.840725
Target:  5'- cUCCGCCAcCGa--GCGCG-CCUGCUCc -3'
miRNA:   3'- -GGGUGGUcGUguaCGUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 119227 0.67 0.840725
Target:  5'- cCCCuuGCCuGUACccGCAgGGCCcGCUCc -3'
miRNA:   3'- -GGG--UGGuCGUGuaCGUgCUGGaCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.