miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 79570 0.72 0.579602
Target:  5'- cCUCGCCGcGCGCGUGCGCGccauagagGCCaUGCUg -3'
miRNA:   3'- -GGGUGGU-CGUGUACGUGC--------UGG-ACGAg -5'
21551 5' -56.5 NC_004812.1 + 82261 0.72 0.588741
Target:  5'- cCCCACCAGCGCGcGCcGCaGGCUcgccaggUGCUCc -3'
miRNA:   3'- -GGGUGGUCGUGUaCG-UG-CUGG-------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 153701 0.72 0.579602
Target:  5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3'
miRNA:   3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 114593 0.72 0.579602
Target:  5'- gCCC-CCGGUGC-UGCGCGAgCUGCg- -3'
miRNA:   3'- -GGGuGGUCGUGuACGUGCUgGACGag -5'
21551 5' -56.5 NC_004812.1 + 154282 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 108851 0.72 0.559408
Target:  5'- gCCC-CCAGCGCcgcgGCGCuGACCUcGUUCg -3'
miRNA:   3'- -GGGuGGUCGUGua--CGUG-CUGGA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 131280 0.72 0.589758
Target:  5'- aCCGCCGGCugGUG-GCGACgC-GCUCg -3'
miRNA:   3'- gGGUGGUCGugUACgUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 73521 0.72 0.589758
Target:  5'- aCCuCCAGCGCGUGgAUGACgCgacGCUCa -3'
miRNA:   3'- gGGuGGUCGUGUACgUGCUG-Ga--CGAG- -5'
21551 5' -56.5 NC_004812.1 + 28358 0.72 0.569483
Target:  5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 28774 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 125141 0.72 0.569483
Target:  5'- cCCCGcaucacCCAGCGCGUGCGCuACgaGUUCg -3'
miRNA:   3'- -GGGU------GGUCGUGUACGUGcUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 28193 0.72 0.579602
Target:  5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3'
miRNA:   3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 70248 0.71 0.640858
Target:  5'- gCCCAcCCAGCGC--GCACcGCCcgGCUCu -3'
miRNA:   3'- -GGGU-GGUCGUGuaCGUGcUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 127735 0.71 0.610156
Target:  5'- gCCCgcgGCCAGCGCAcGCGCGGCgCgGCg- -3'
miRNA:   3'- -GGG---UGGUCGUGUaCGUGCUG-GaCGag -5'
21551 5' -56.5 NC_004812.1 + 14999 0.71 0.624478
Target:  5'- aCCCGCCAGCuGCAggccgcggucuucgGCGCG--CUGCUCa -3'
miRNA:   3'- -GGGUGGUCG-UGUa-------------CGUGCugGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144949 0.71 0.629596
Target:  5'- gCUCGCCGGCGgacgcccCGUGCGCGGCgaGCg- -3'
miRNA:   3'- -GGGUGGUCGU-------GUACGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 16695 0.71 0.63062
Target:  5'- cCCCgACCGGCGgGUGCGCGagcgaccgcgggGCCggucccGCUCg -3'
miRNA:   3'- -GGG-UGGUCGUgUACGUGC------------UGGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 151875 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 154838 0.71 0.634716
Target:  5'- uCCCGUCGGCGCGggGCGCGGCUgcgagggggcgcggGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUGGa-------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 15538 0.71 0.610156
Target:  5'- cCCCGCCGGCGCGcagcgcggagagUGCGuCGuCCUGUg- -3'
miRNA:   3'- -GGGUGGUCGUGU------------ACGU-GCuGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.