miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 26367 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 81694 0.71 0.63062
Target:  5'- aCCCGCUcGCGCGccUGCACGcgcGCCUGgaCg -3'
miRNA:   3'- -GGGUGGuCGUGU--ACGUGC---UGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 29330 0.71 0.634716
Target:  5'- uCCCGUCGGCGCGggGCGCGGCUgcgagggggcgcggGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUGGa-------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 14999 0.71 0.624478
Target:  5'- aCCCGCCAGCuGCAggccgcggucuucgGCGCG--CUGCUCa -3'
miRNA:   3'- -GGGUGGUCG-UGUa-------------CGUGCugGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 70248 0.71 0.640858
Target:  5'- gCCCAcCCAGCGC--GCACcGCCcgGCUCu -3'
miRNA:   3'- -GGGU-GGUCGUGuaCGUGcUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 154838 0.71 0.634716
Target:  5'- uCCCGUCGGCGCGggGCGCGGCUgcgagggggcgcggGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUGGa-------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 152101 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144713 0.7 0.671496
Target:  5'- cCCCAUCGccgaggucgcGCACGUGCGCGGcgucacgguuucCCUGCg- -3'
miRNA:   3'- -GGGUGGU----------CGUGUACGUGCU------------GGACGag -5'
21551 5' -56.5 NC_004812.1 + 153457 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 153134 0.7 0.691775
Target:  5'- gCCCGCCGcGCugAcgGCGCGACC-GCcCg -3'
miRNA:   3'- -GGGUGGU-CGugUa-CGUGCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 14617 0.7 0.701845
Target:  5'- aCCACUgcagccggGGCACccGCGCGGCCUccagccgguGCUCc -3'
miRNA:   3'- gGGUGG--------UCGUGuaCGUGCUGGA---------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 18337 0.7 0.701845
Target:  5'- gCCCGCagGGCGCGgcGCGCGACCgcgGC-Cg -3'
miRNA:   3'- -GGGUGg-UCGUGUa-CGUGCUGGa--CGaG- -5'
21551 5' -56.5 NC_004812.1 + 152318 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 153637 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 65630 0.7 0.691775
Target:  5'- uCCCACCu-CAUcgGCGCGGCgUGCg- -3'
miRNA:   3'- -GGGUGGucGUGuaCGUGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 12506 0.7 0.671496
Target:  5'- gCCCguACUggggGGCGCAUGUuCG-CCUGCUCg -3'
miRNA:   3'- -GGG--UGG----UCGUGUACGuGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 96526 0.7 0.651088
Target:  5'- gCCUACCuGGCGCggGCcgcCGGCCUGgUCg -3'
miRNA:   3'- -GGGUGG-UCGUGuaCGu--GCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 82418 0.7 0.651088
Target:  5'- gCCACCAGCGac--CugGACCUGCc- -3'
miRNA:   3'- gGGUGGUCGUguacGugCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 26593 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 142893 0.7 0.661304
Target:  5'- uCCCGCUgaccgaggAGCACAUGCAguucguCGACC-GCUUc -3'
miRNA:   3'- -GGGUGG--------UCGUGUACGU------GCUGGaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.