miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 26593 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12506 0.7 0.671496
Target:  5'- gCCCguACUggggGGCGCAUGUuCG-CCUGCUCg -3'
miRNA:   3'- -GGG--UGG----UCGUGUACGuGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 27948 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 105328 0.7 0.691775
Target:  5'- gCCCGCgC-GCGCAUGUGCG-CCaGCUCc -3'
miRNA:   3'- -GGGUG-GuCGUGUACGUGCuGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 96526 0.7 0.651088
Target:  5'- gCCUACCuGGCGCggGCcgcCGGCCUGgUCg -3'
miRNA:   3'- -GGGUGG-UCGUGuaCGu--GCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 152318 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 153637 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 142893 0.7 0.661304
Target:  5'- uCCCGCUgaccgaggAGCACAUGCAguucguCGACC-GCUUc -3'
miRNA:   3'- -GGGUGG--------UCGUGUACGU------GCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 63313 0.69 0.731664
Target:  5'- aCCCGCCuggAGCACAUccugcucuucucGCuggguuccuGCGACCUGCcCg -3'
miRNA:   3'- -GGGUGG---UCGUGUA------------CG---------UGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 106340 0.69 0.731664
Target:  5'- aCCCGCCGGUuCGcGCcCGGCgaGCUCc -3'
miRNA:   3'- -GGGUGGUCGuGUaCGuGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 64581 0.69 0.741444
Target:  5'- uUCACgggGGUGCA-GCACGGCCUGCUg -3'
miRNA:   3'- gGGUGg--UCGUGUaCGUGCUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 154372 0.69 0.710858
Target:  5'- cCCCGCCGccgcgccGCGCGUGCGCugggccgcgGGCCgcggcgacacgcUGCUCg -3'
miRNA:   3'- -GGGUGGU-------CGUGUACGUG---------CUGG------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 126659 0.69 0.751128
Target:  5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3'
miRNA:   3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 31697 0.69 0.756889
Target:  5'- cCUCGCCGGCGCAggccuccgucaggGCcuCGGCgaGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa------------CGu-GCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 75971 0.69 0.760708
Target:  5'- gCgGCCAGCGCcUGCagGCGGCgCaGCUCg -3'
miRNA:   3'- gGgUGGUCGUGuACG--UGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 128660 0.69 0.760708
Target:  5'- -gCACCAGCACGcGCACGuCCUcggGgUCg -3'
miRNA:   3'- ggGUGGUCGUGUaCGUGCuGGA---CgAG- -5'
21551 5' -56.5 NC_004812.1 + 54394 0.69 0.760708
Target:  5'- gCCCGCgGGCACG-GC-CGgGgCUGCUCa -3'
miRNA:   3'- -GGGUGgUCGUGUaCGuGC-UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 92380 0.69 0.760708
Target:  5'- gCCCGCUccgaaucgaaAGCGCGUGC-CGGCCggGC-Cg -3'
miRNA:   3'- -GGGUGG----------UCGUGUACGuGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 75509 0.69 0.741444
Target:  5'- gCCCcCCAGCGCccgGUGCACGuccGCCcGCa- -3'
miRNA:   3'- -GGGuGGUCGUG---UACGUGC---UGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 12663 0.69 0.760708
Target:  5'- gCCCGCC-GCGCAUGgagccgauCAUGACCUcGCa- -3'
miRNA:   3'- -GGGUGGuCGUGUAC--------GUGCUGGA-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.