miRNA display CGI


Results 101 - 120 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 48478 0.69 0.731664
Target:  5'- -aCGCCGGCc---GCGCGGCCggggGCUCg -3'
miRNA:   3'- ggGUGGUCGuguaCGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 63313 0.69 0.731664
Target:  5'- aCCCGCCuggAGCACAUccugcucuucucGCuggguuccuGCGACCUGCcCg -3'
miRNA:   3'- -GGGUGG---UCGUGUA------------CG---------UGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 106340 0.69 0.731664
Target:  5'- aCCCGCCGGUuCGcGCcCGGCgaGCUCc -3'
miRNA:   3'- -GGGUGGUCGuGUaCGuGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 12663 0.69 0.760708
Target:  5'- gCCCGCC-GCGCAUGgagccgauCAUGACCUcGCa- -3'
miRNA:   3'- -GGGUGGuCGUGUAC--------GUGCUGGA-CGag -5'
21551 5' -56.5 NC_004812.1 + 54394 0.69 0.760708
Target:  5'- gCCCGCgGGCACG-GC-CGgGgCUGCUCa -3'
miRNA:   3'- -GGGUGgUCGUGUaCGuGC-UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 148280 0.69 0.721799
Target:  5'- gCCCGgCAGCGCGgcggcgGCGcCGGCCcGCUg -3'
miRNA:   3'- -GGGUgGUCGUGUa-----CGU-GCUGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 146830 0.69 0.721799
Target:  5'- uCCCGCgGGaCACccGCGCGGCCgccgGCg- -3'
miRNA:   3'- -GGGUGgUC-GUGuaCGUGCUGGa---CGag -5'
21551 5' -56.5 NC_004812.1 + 82698 0.69 0.721799
Target:  5'- aCCGCCAGC-CGggcugGCGCGACUcgGCg- -3'
miRNA:   3'- gGGUGGUCGuGUa----CGUGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 71869 0.69 0.721799
Target:  5'- cCCCugCaggAGCGCGcGCACGGCgC-GCUCg -3'
miRNA:   3'- -GGGugG---UCGUGUaCGUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 136220 0.69 0.711856
Target:  5'- aCCGCCAGCuc---UACGcCCUGCUCa -3'
miRNA:   3'- gGGUGGUCGuguacGUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 98301 0.69 0.721799
Target:  5'- aCC-CCGGCGCGUGgACGACgaUGUUUg -3'
miRNA:   3'- gGGuGGUCGUGUACgUGCUGg-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 62460 0.69 0.711856
Target:  5'- aCCCAcgaaccCCAGCGCG---GCGGCCUGCg- -3'
miRNA:   3'- -GGGU------GGUCGUGUacgUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 28864 0.69 0.710858
Target:  5'- cCCCGCCGccgcgccGCGCGUGCGCugggccgcgGGCCgcggcgacacgcUGCUCg -3'
miRNA:   3'- -GGGUGGU-------CGUGUACGUG---------CUGG------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 138026 0.69 0.731664
Target:  5'- gCCGCCGGCGCggGUGCGGCg-GCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 61023 0.69 0.741444
Target:  5'- gCCgCGCCcGCGCGcggGCGCGGCCgUGCg- -3'
miRNA:   3'- -GG-GUGGuCGUGUa--CGUGCUGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 1150 0.69 0.751128
Target:  5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3'
miRNA:   3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 59204 0.69 0.751128
Target:  5'- aCCCACCAGUACGcGCccgaGGCCcGCg- -3'
miRNA:   3'- -GGGUGGUCGUGUaCGug--CUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 142302 0.69 0.741444
Target:  5'- aCCCugGCCAGCAaccccgccucCGUGgAgGACCUGCa- -3'
miRNA:   3'- -GGG--UGGUCGU----------GUACgUgCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 92380 0.69 0.760708
Target:  5'- gCCCGCUccgaaucgaaAGCGCGUGC-CGGCCggGC-Cg -3'
miRNA:   3'- -GGGUGG----------UCGUGUACGuGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 88469 0.69 0.725755
Target:  5'- gUCCAUgGGCAUcgGCaugcaggggcugcauACGGCCUGcCUCa -3'
miRNA:   3'- -GGGUGgUCGUGuaCG---------------UGCUGGAC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.