Results 41 - 60 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21551 | 5' | -56.5 | NC_004812.1 | + | 28774 | 0.72 | 0.569483 |
Target: 5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3' miRNA: 3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 153866 | 0.72 | 0.569483 |
Target: 5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3' miRNA: 3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 79570 | 0.72 | 0.579602 |
Target: 5'- cCUCGCCGcGCGCGUGCGCGccauagagGCCaUGCUg -3' miRNA: 3'- -GGGUGGU-CGUGUACGUGC--------UGG-ACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 114593 | 0.72 | 0.579602 |
Target: 5'- gCCC-CCGGUGC-UGCGCGAgCUGCg- -3' miRNA: 3'- -GGGuGGUCGUGuACGUGCUgGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 28193 | 0.72 | 0.579602 |
Target: 5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3' miRNA: 3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 153701 | 0.72 | 0.579602 |
Target: 5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3' miRNA: 3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 68720 | 0.72 | 0.585691 |
Target: 5'- gCCCGCCAGCACGcccuucauccgcaGCACGGCCaUGaugUCg -3' miRNA: 3'- -GGGUGGUCGUGUa------------CGUGCUGG-ACg--AG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 82261 | 0.72 | 0.588741 |
Target: 5'- cCCCACCAGCGCGcGCcGCaGGCUcgccaggUGCUCc -3' miRNA: 3'- -GGGUGGUCGUGUaCG-UG-CUGG-------ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 131280 | 0.72 | 0.589758 |
Target: 5'- aCCGCCGGCugGUG-GCGACgC-GCUCg -3' miRNA: 3'- gGGUGGUCGugUACgUGCUG-GaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 73521 | 0.72 | 0.589758 |
Target: 5'- aCCuCCAGCGCGUGgAUGACgCgacGCUCa -3' miRNA: 3'- gGGuGGUCGUGUACgUGCUG-Ga--CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 5932 | 0.72 | 0.589758 |
Target: 5'- gCCGCCccggAGCGCggGgGCGACCggcgGCUCc -3' miRNA: 3'- gGGUGG----UCGUGuaCgUGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 131440 | 0.72 | 0.589758 |
Target: 5'- gCCGCCccggAGCGCggGgGCGACCggcgGCUCc -3' miRNA: 3'- gGGUGG----UCGUGuaCgUGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 130892 | 0.71 | 0.599945 |
Target: 5'- cCCCAgUGGCugAUGaacaacCACGACCUGCg- -3' miRNA: 3'- -GGGUgGUCGugUAC------GUGCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 25626 | 0.71 | 0.604027 |
Target: 5'- cCCCACgcaguagcggaacagCAGCGCGcGgGCGGCCgGCUCg -3' miRNA: 3'- -GGGUG---------------GUCGUGUaCgUGCUGGaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 15538 | 0.71 | 0.610156 |
Target: 5'- cCCCGCCGGCGCGcagcgcggagagUGCGuCGuCCUGUg- -3' miRNA: 3'- -GGGUGGUCGUGU------------ACGU-GCuGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 127735 | 0.71 | 0.610156 |
Target: 5'- gCCCgcgGCCAGCGCAcGCGCGGCgCgGCg- -3' miRNA: 3'- -GGG---UGGUCGUGUaCGUGCUG-GaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 14999 | 0.71 | 0.624478 |
Target: 5'- aCCCGCCAGCuGCAggccgcggucuucgGCGCG--CUGCUCa -3' miRNA: 3'- -GGGUGGUCG-UGUa-------------CGUGCugGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 144949 | 0.71 | 0.629596 |
Target: 5'- gCUCGCCGGCGgacgcccCGUGCGCGGCgaGCg- -3' miRNA: 3'- -GGGUGGUCGU-------GUACGUGCUGgaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 151875 | 0.71 | 0.63062 |
Target: 5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3' miRNA: 3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 16695 | 0.71 | 0.63062 |
Target: 5'- cCCCgACCGGCGgGUGCGCGagcgaccgcgggGCCggucccGCUCg -3' miRNA: 3'- -GGG-UGGUCGUgUACGUGC------------UGGa-----CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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