miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 105328 0.7 0.691775
Target:  5'- gCCCGCgC-GCGCAUGUGCG-CCaGCUCc -3'
miRNA:   3'- -GGGUG-GuCGUGUACGUGCuGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 18337 0.7 0.701845
Target:  5'- gCCCGCagGGCGCGgcGCGCGACCgcgGC-Cg -3'
miRNA:   3'- -GGGUGg-UCGUGUa-CGUGCUGGa--CGaG- -5'
21551 5' -56.5 NC_004812.1 + 14617 0.7 0.701845
Target:  5'- aCCACUgcagccggGGCACccGCGCGGCCUccagccgguGCUCc -3'
miRNA:   3'- gGGUGG--------UCGUGuaCGUGCUGGA---------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 152318 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 28128 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 153637 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 85384 0.7 0.701845
Target:  5'- cCCCGCC-GCGCccuCGCGGCCgcccGCUCg -3'
miRNA:   3'- -GGGUGGuCGUGuacGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 26810 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 154372 0.69 0.710858
Target:  5'- cCCCGCCGccgcgccGCGCGUGCGCugggccgcgGGCCgcggcgacacgcUGCUCg -3'
miRNA:   3'- -GGGUGGU-------CGUGUACGUG---------CUGG------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28864 0.69 0.710858
Target:  5'- cCCCGCCGccgcgccGCGCGUGCGCugggccgcgGGCCgcggcgacacgcUGCUCg -3'
miRNA:   3'- -GGGUGGU-------CGUGUACGUG---------CUGG------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 26093 0.69 0.711856
Target:  5'- cUCCGCCAGCACGUGgGgCGGCa-GCg- -3'
miRNA:   3'- -GGGUGGUCGUGUACgU-GCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 39356 0.69 0.711856
Target:  5'- gCCC-CCAGCACGgccUGCACGuugcggGCCaGCUg -3'
miRNA:   3'- -GGGuGGUCGUGU---ACGUGC------UGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 108583 0.69 0.711856
Target:  5'- cCCCGCUcGgGCA-GCGCGGCCUaaccacGCUCu -3'
miRNA:   3'- -GGGUGGuCgUGUaCGUGCUGGA------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 62460 0.69 0.711856
Target:  5'- aCCCAcgaaccCCAGCGCG---GCGGCCUGCg- -3'
miRNA:   3'- -GGGU------GGUCGUGUacgUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 136220 0.69 0.711856
Target:  5'- aCCGCCAGCuc---UACGcCCUGCUCa -3'
miRNA:   3'- gGGUGGUCGuguacGUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 71869 0.69 0.721799
Target:  5'- cCCCugCaggAGCGCGcGCACGGCgC-GCUCg -3'
miRNA:   3'- -GGGugG---UCGUGUaCGUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 117379 0.69 0.721799
Target:  5'- gCCCGgCAGCGCGgcggcgGCGcCGGCCcGCUg -3'
miRNA:   3'- -GGGUgGUCGUGUa-----CGU-GCUGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 98301 0.69 0.721799
Target:  5'- aCC-CCGGCGCGUGgACGACgaUGUUUg -3'
miRNA:   3'- gGGuGGUCGUGUACgUGCUGg-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 146830 0.69 0.721799
Target:  5'- uCCCGCgGGaCACccGCGCGGCCgccgGCg- -3'
miRNA:   3'- -GGGUGgUC-GUGuaCGUGCUGGa---CGag -5'
21551 5' -56.5 NC_004812.1 + 82698 0.69 0.721799
Target:  5'- aCCGCCAGC-CGggcugGCGCGACUcgGCg- -3'
miRNA:   3'- gGGUGGUCGuGUa----CGUGCUGGa-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.