Results 101 - 120 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21551 | 5' | -56.5 | NC_004812.1 | + | 146830 | 0.69 | 0.721799 |
Target: 5'- uCCCGCgGGaCACccGCGCGGCCgccgGCg- -3' miRNA: 3'- -GGGUGgUC-GUGuaCGUGCUGGa---CGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 88469 | 0.69 | 0.725755 |
Target: 5'- gUCCAUgGGCAUcgGCaugcaggggcugcauACGGCCUGcCUCa -3' miRNA: 3'- -GGGUGgUCGUGuaCG---------------UGCUGGAC-GAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 63313 | 0.69 | 0.731664 |
Target: 5'- aCCCGCCuggAGCACAUccugcucuucucGCuggguuccuGCGACCUGCcCg -3' miRNA: 3'- -GGGUGG---UCGUGUA------------CG---------UGCUGGACGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 48478 | 0.69 | 0.731664 |
Target: 5'- -aCGCCGGCc---GCGCGGCCggggGCUCg -3' miRNA: 3'- ggGUGGUCGuguaCGUGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 138026 | 0.69 | 0.731664 |
Target: 5'- gCCGCCGGCGCggGUGCGGCg-GCg- -3' miRNA: 3'- gGGUGGUCGUGuaCGUGCUGgaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 106340 | 0.69 | 0.731664 |
Target: 5'- aCCCGCCGGUuCGcGCcCGGCgaGCUCc -3' miRNA: 3'- -GGGUGGUCGuGUaCGuGCUGgaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 61023 | 0.69 | 0.741444 |
Target: 5'- gCCgCGCCcGCGCGcggGCGCGGCCgUGCg- -3' miRNA: 3'- -GG-GUGGuCGUGUa--CGUGCUGG-ACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 64581 | 0.69 | 0.741444 |
Target: 5'- uUCACgggGGUGCA-GCACGGCCUGCUg -3' miRNA: 3'- gGGUGg--UCGUGUaCGUGCUGGACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 75509 | 0.69 | 0.741444 |
Target: 5'- gCCCcCCAGCGCccgGUGCACGuccGCCcGCa- -3' miRNA: 3'- -GGGuGGUCGUG---UACGUGC---UGGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 142302 | 0.69 | 0.741444 |
Target: 5'- aCCCugGCCAGCAaccccgccucCGUGgAgGACCUGCa- -3' miRNA: 3'- -GGG--UGGUCGU----------GUACgUgCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 59204 | 0.69 | 0.751128 |
Target: 5'- aCCCACCAGUACGcGCccgaGGCCcGCg- -3' miRNA: 3'- -GGGUGGUCGUGUaCGug--CUGGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 1150 | 0.69 | 0.751128 |
Target: 5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3' miRNA: 3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 97312 | 0.69 | 0.751128 |
Target: 5'- aCCGCgagguggagCAGCugAUGCGCaACCUGgUCg -3' miRNA: 3'- gGGUG---------GUCGugUACGUGcUGGACgAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 126659 | 0.69 | 0.751128 |
Target: 5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3' miRNA: 3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 76575 | 0.69 | 0.751128 |
Target: 5'- aCCCcCCGcGCAUGUGCuCGGCCgucgaGCUCc -3' miRNA: 3'- -GGGuGGU-CGUGUACGuGCUGGa----CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 31697 | 0.69 | 0.756889 |
Target: 5'- cCUCGCCGGCGCAggccuccgucaggGCcuCGGCgaGCUCg -3' miRNA: 3'- -GGGUGGUCGUGUa------------CGu-GCUGgaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 128660 | 0.69 | 0.760708 |
Target: 5'- -gCACCAGCACGcGCACGuCCUcggGgUCg -3' miRNA: 3'- ggGUGGUCGUGUaCGUGCuGGA---CgAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 75971 | 0.69 | 0.760708 |
Target: 5'- gCgGCCAGCGCcUGCagGCGGCgCaGCUCg -3' miRNA: 3'- gGgUGGUCGUGuACG--UGCUG-GaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 54394 | 0.69 | 0.760708 |
Target: 5'- gCCCGCgGGCACG-GC-CGgGgCUGCUCa -3' miRNA: 3'- -GGGUGgUCGUGUaCGuGC-UgGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 92380 | 0.69 | 0.760708 |
Target: 5'- gCCCGCUccgaaucgaaAGCGCGUGC-CGGCCggGC-Cg -3' miRNA: 3'- -GGGUGG----------UCGUGUACGuGCUGGa-CGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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