Results 61 - 80 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21551 | 5' | -56.5 | NC_004812.1 | + | 68742 | 0.66 | 0.876789 |
Target: 5'- aCCGCgGGCAgacgcgaacgccguCGUGCGCGcacGCCgagcUGCUCg -3' miRNA: 3'- gGGUGgUCGU--------------GUACGUGC---UGG----ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 18772 | 0.66 | 0.872441 |
Target: 5'- gUCGCCAGCGCcaggaccucccgggGCcagGgGGCCUGCUCc -3' miRNA: 3'- gGGUGGUCGUGua------------CG---UgCUGGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 92774 | 0.66 | 0.871709 |
Target: 5'- gCCCACCAGCA---GCGaGuCCUGCa- -3' miRNA: 3'- -GGGUGGUCGUguaCGUgCuGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 94324 | 0.66 | 0.871709 |
Target: 5'- uCgCugCAGUAgGUgugcgGCGCGGCCUGCg- -3' miRNA: 3'- -GgGugGUCGUgUA-----CGUGCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 26993 | 0.66 | 0.871709 |
Target: 5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3' miRNA: 3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 80979 | 0.66 | 0.871709 |
Target: 5'- aCCGCCgcGGCGCGcUGguCGGuCgUGCUCg -3' miRNA: 3'- gGGUGG--UCGUGU-ACguGCU-GgACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 52993 | 0.66 | 0.871709 |
Target: 5'- gCUACCGcCGCGUGCugGccaacuUCUGCUCc -3' miRNA: 3'- gGGUGGUcGUGUACGugCu-----GGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 38656 | 0.66 | 0.871709 |
Target: 5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3' miRNA: 3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 52315 | 0.66 | 0.871709 |
Target: 5'- cCCCGCCGucGCccGCcgGCgACGGCCcgucGCUCu -3' miRNA: 3'- -GGGUGGU--CG--UGuaCG-UGCUGGa---CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 79382 | 0.66 | 0.871709 |
Target: 5'- gCCCucgACgCGGC-CcUGCGCGGCgaGCUCg -3' miRNA: 3'- -GGG---UG-GUCGuGuACGUGCUGgaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 152502 | 0.66 | 0.871709 |
Target: 5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3' miRNA: 3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 58013 | 0.66 | 0.871709 |
Target: 5'- cCCCGCCcucGGCGaugAUGcCGCGcAgCUGCUCg -3' miRNA: 3'- -GGGUGG---UCGUg--UAC-GUGC-UgGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 23786 | 0.66 | 0.871709 |
Target: 5'- gCCAuCCGaCGCGUGCGCGGCUccaUGCg- -3' miRNA: 3'- gGGU-GGUcGUGUACGUGCUGG---ACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 23168 | 0.66 | 0.871709 |
Target: 5'- gCC-CUGGCGCAcaccgUGUACGugCUGCa- -3' miRNA: 3'- gGGuGGUCGUGU-----ACGUGCugGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 7755 | 0.66 | 0.871709 |
Target: 5'- gCCCGCCuccccccccGUGCGUGCGCG-CCgUGCg- -3' miRNA: 3'- -GGGUGGu--------CGUGUACGUGCuGG-ACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 113952 | 0.66 | 0.871709 |
Target: 5'- gCCCcCCuGUACGUGCACGGCaaauacuuuuaUUGCa- -3' miRNA: 3'- -GGGuGGuCGUGUACGUGCUG-----------GACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 144101 | 0.66 | 0.864271 |
Target: 5'- cCCCGCUgccguacguGGUGC-UGCGCGACCaGCa- -3' miRNA: 3'- -GGGUGG---------UCGUGuACGUGCUGGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 109427 | 0.66 | 0.864271 |
Target: 5'- gUCCACCucGCAUAUuaaggugacccGCGCGGCCUGg-- -3' miRNA: 3'- -GGGUGGu-CGUGUA-----------CGUGCUGGACgag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 92724 | 0.66 | 0.864271 |
Target: 5'- uUCUGCC-GCugGgGCGCGAgCUGUUCa -3' miRNA: 3'- -GGGUGGuCGugUaCGUGCUgGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 27078 | 0.66 | 0.864271 |
Target: 5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3' miRNA: 3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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