miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 109427 0.66 0.864271
Target:  5'- gUCCACCucGCAUAUuaaggugacccGCGCGGCCUGg-- -3'
miRNA:   3'- -GGGUGGu-CGUGUA-----------CGUGCUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 2976 0.66 0.864271
Target:  5'- cCCCGCCcGCccGCAUGgGCGGCCcGUc- -3'
miRNA:   3'- -GGGUGGuCG--UGUACgUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 83162 0.66 0.864271
Target:  5'- aCCCcCUGGCGCcguggcGCGCGGCCccggaGCUCg -3'
miRNA:   3'- -GGGuGGUCGUGua----CGUGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 51110 0.66 0.864271
Target:  5'- aCCCACuCGGcCGCcggGCcCGgucGCCUGCUCc -3'
miRNA:   3'- -GGGUG-GUC-GUGua-CGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 59962 0.66 0.864271
Target:  5'- gCCCACggggucgcgCGGCGCcgGCucgugGCGGCCguggUGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGUGuaCG-----UGCUGG----ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144101 0.66 0.864271
Target:  5'- cCCCGCUgccguacguGGUGC-UGCGCGACCaGCa- -3'
miRNA:   3'- -GGGUGG---------UCGUGuACGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 93065 0.66 0.864271
Target:  5'- cCCUGCCGGC-CGgaccCACGACCcuggaGCUCg -3'
miRNA:   3'- -GGGUGGUCGuGUac--GUGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 89982 0.66 0.864271
Target:  5'- uCCCGCUucGCcCGUGCcgACGGCCUGggCg -3'
miRNA:   3'- -GGGUGGu-CGuGUACG--UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 77214 0.66 0.864271
Target:  5'- cCCCgaGCCAGCug--GCGCGGCCgacGCg- -3'
miRNA:   3'- -GGG--UGGUCGuguaCGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 92724 0.66 0.864271
Target:  5'- uUCUGCC-GCugGgGCGCGAgCUGUUCa -3'
miRNA:   3'- -GGGUGGuCGugUaCGUGCUgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 27078 0.66 0.864271
Target:  5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3'
miRNA:   3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 46032 0.66 0.864271
Target:  5'- gCCGCgGGUccGCGUGCGCGGCCa---- -3'
miRNA:   3'- gGGUGgUCG--UGUACGUGCUGGacgag -5'
21551 5' -56.5 NC_004812.1 + 44467 0.66 0.861998
Target:  5'- cCCCGcCCGGCguuACGUgucgaagaugcgccGCugGAucuCCUGCUCg -3'
miRNA:   3'- -GGGU-GGUCG---UGUA--------------CGugCU---GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 133147 0.67 0.856623
Target:  5'- cCUCGCCGcGCGCcucGCcgACGACCcGCUCu -3'
miRNA:   3'- -GGGUGGU-CGUGua-CG--UGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 66131 0.67 0.856623
Target:  5'- gCCGCCGccGCGCAggauggugUGCACGAagaaCaGCUCg -3'
miRNA:   3'- gGGUGGU--CGUGU--------ACGUGCUg---GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 73724 0.67 0.856623
Target:  5'- gCCACCAGCGCcacCAUGACgUcGUUCa -3'
miRNA:   3'- gGGUGGUCGUGuacGUGCUGgA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 111194 0.67 0.856623
Target:  5'- gCCUACgGGCugGUGCuCGGCUgguacgucgUGUUCg -3'
miRNA:   3'- -GGGUGgUCGugUACGuGCUGG---------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 99280 0.67 0.856623
Target:  5'- gCCCGugggguCCAGgCGCcgGCA-GACCUGCg- -3'
miRNA:   3'- -GGGU------GGUC-GUGuaCGUgCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 24794 0.67 0.856623
Target:  5'- aUgAUCAGgGCGacggGCACGGCCUGgUCg -3'
miRNA:   3'- gGgUGGUCgUGUa---CGUGCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 59933 0.67 0.856623
Target:  5'- gCCCACUcgAGCGCgGUGguC-ACCUGCUg -3'
miRNA:   3'- -GGGUGG--UCGUG-UACguGcUGGACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.