Results 101 - 120 of 318 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21551 | 5' | -56.5 | NC_004812.1 | + | 24794 | 0.67 | 0.856623 |
Target: 5'- aUgAUCAGgGCGacggGCACGGCCUGgUCg -3' miRNA: 3'- gGgUGGUCgUGUa---CGUGCUGGACgAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 55379 | 0.67 | 0.856623 |
Target: 5'- gCCCgucgagGCCGGCGCG-GCGCc-CCUGCUg -3' miRNA: 3'- -GGG------UGGUCGUGUaCGUGcuGGACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 111194 | 0.67 | 0.856623 |
Target: 5'- gCCUACgGGCugGUGCuCGGCUgguacgucgUGUUCg -3' miRNA: 3'- -GGGUGgUCGugUACGuGCUGG---------ACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 59933 | 0.67 | 0.856623 |
Target: 5'- gCCCACUcgAGCGCgGUGguC-ACCUGCUg -3' miRNA: 3'- -GGGUGG--UCGUG-UACguGcUGGACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 99280 | 0.67 | 0.856623 |
Target: 5'- gCCCGugggguCCAGgCGCcgGCA-GACCUGCg- -3' miRNA: 3'- -GGGU------GGUC-GUGuaCGUgCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 106042 | 0.67 | 0.848772 |
Target: 5'- gCCGCCGGCGCucgGCcACGAg--GCUCc -3' miRNA: 3'- gGGUGGUCGUGua-CG-UGCUggaCGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 103797 | 0.67 | 0.848772 |
Target: 5'- uCCCACCAGCugGgucGCGcCGACgUGa-- -3' miRNA: 3'- -GGGUGGUCGugUa--CGU-GCUGgACgag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 51949 | 0.67 | 0.848772 |
Target: 5'- uCCCACCccCGCAacgacgaggagcUGaACGACCUGCUg -3' miRNA: 3'- -GGGUGGucGUGU------------ACgUGCUGGACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 28020 | 0.67 | 0.848772 |
Target: 5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3' miRNA: 3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 87143 | 0.67 | 0.848772 |
Target: 5'- gCgCGCCAGgGCGUGCuCGGCC-GCg- -3' miRNA: 3'- -GgGUGGUCgUGUACGuGCUGGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 58692 | 0.67 | 0.848772 |
Target: 5'- gCCGCCcucAGCGcCAUGC-UGACCaaGCUCa -3' miRNA: 3'- gGGUGG---UCGU-GUACGuGCUGGa-CGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 3957 | 0.67 | 0.848772 |
Target: 5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3' miRNA: 3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 69125 | 0.67 | 0.848772 |
Target: 5'- -gCugCGGCuCAUGCGCGACUggGCg- -3' miRNA: 3'- ggGugGUCGuGUACGUGCUGGa-CGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 19396 | 0.67 | 0.848772 |
Target: 5'- -gCACCAggacGCGCGcgGuCACGGCCUGCg- -3' miRNA: 3'- ggGUGGU----CGUGUa-C-GUGCUGGACGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 129465 | 0.67 | 0.848772 |
Target: 5'- gCCGCCAGCcCggGCACGGCg-GC-Ca -3' miRNA: 3'- gGGUGGUCGuGuaCGUGCUGgaCGaG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 47325 | 0.67 | 0.848772 |
Target: 5'- aCCGCCAGCAagcGCgagcaacggGCGACCggGCUg -3' miRNA: 3'- gGGUGGUCGUguaCG---------UGCUGGa-CGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 75676 | 0.67 | 0.848772 |
Target: 5'- cCCCGCCGGC-C-UGCGCGAgguCCaGCa- -3' miRNA: 3'- -GGGUGGUCGuGuACGUGCU---GGaCGag -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 86882 | 0.67 | 0.848772 |
Target: 5'- -aCGCCGGCAa--GCGCGACCccagccUGCUg -3' miRNA: 3'- ggGUGGUCGUguaCGUGCUGG------ACGAg -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 153529 | 0.67 | 0.848772 |
Target: 5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3' miRNA: 3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5' |
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21551 | 5' | -56.5 | NC_004812.1 | + | 68181 | 0.67 | 0.848772 |
Target: 5'- cCCCGgCGGCACugggggguggGCugGGCCgUGCg- -3' miRNA: 3'- -GGGUgGUCGUGua--------CGugCUGG-ACGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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