miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 25339 0.73 0.490614
Target:  5'- gCCACCAGCcgGCGguggGCgGCGACCacggGCUCg -3'
miRNA:   3'- gGGUGGUCG--UGUa---CG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 25626 0.71 0.604027
Target:  5'- cCCCACgcaguagcggaacagCAGCGCGcGgGCGGCCgGCUCg -3'
miRNA:   3'- -GGGUG---------------GUCGUGUaCgUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 26093 0.69 0.711856
Target:  5'- cUCCGCCAGCACGUGgGgCGGCa-GCg- -3'
miRNA:   3'- -GGGUGGUCGUGUACgU-GCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 26367 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 26593 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 26810 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 26922 0.66 0.899265
Target:  5'- uCCCGCCgGGUACG-GCGCcGCggGCUCa -3'
miRNA:   3'- -GGGUGG-UCGUGUaCGUGcUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 26993 0.66 0.871709
Target:  5'- cCCCGCCGGCGCcgGggaggACGGCCccGC-Cg -3'
miRNA:   3'- -GGGUGGUCGUGuaCg----UGCUGGa-CGaG- -5'
21551 5' -56.5 NC_004812.1 + 27078 0.66 0.864271
Target:  5'- gCCGCCgAGUGCcu-CACGGCCUGC-Cg -3'
miRNA:   3'- gGGUGG-UCGUGuacGUGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 27395 0.8 0.208851
Target:  5'- cUCCGCCGGCGCcgccgccGC-CGACCUGCUCu -3'
miRNA:   3'- -GGGUGGUCGUGua-----CGuGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 27484 0.67 0.824068
Target:  5'- gCCCGCCGGCGCGcaaGCGCaaGAgCUcCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa--CGUG--CUgGAcGAG- -5'
21551 5' -56.5 NC_004812.1 + 27547 0.67 0.824068
Target:  5'- gCCCGCCGGCGCGcaagaagaGC-CGGCCcgGCg- -3'
miRNA:   3'- -GGGUGGUCGUGUa-------CGuGCUGGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 27626 0.7 0.691775
Target:  5'- gCCCGCCGcGCugAcgGCGCGACC-GCcCg -3'
miRNA:   3'- -GGGUGGU-CGugUa-CGUGCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 27948 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 28020 0.67 0.848772
Target:  5'- cCCCGCCcGCcuggaccgACGcGCGCGGcggccucuccuuCCUGCUCg -3'
miRNA:   3'- -GGGUGGuCG--------UGUaCGUGCU------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28128 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28193 0.72 0.579602
Target:  5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3'
miRNA:   3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28358 0.72 0.569483
Target:  5'- gUCCGCUGGCcCGccgcGCGCGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGuGUa---CGUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 28774 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28785 0.67 0.840725
Target:  5'- cCCCGCUcuuuucGGC-CGUgGCGCGgcGCCUGCUg -3'
miRNA:   3'- -GGGUGG------UCGuGUA-CGUGC--UGGACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.