miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 45201 0.66 0.899265
Target:  5'- gCCCGggAGCGCAgcaGCGCGGCC-GCg- -3'
miRNA:   3'- -GGGUggUCGUGUa--CGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 46032 0.66 0.864271
Target:  5'- gCCGCgGGUccGCGUGCGCGGCCa---- -3'
miRNA:   3'- gGGUGgUCG--UGUACGUGCUGGacgag -5'
21551 5' -56.5 NC_004812.1 + 47308 0.66 0.892715
Target:  5'- gCCGCCGGCGC--GUACGugCggGCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCugGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 47325 0.67 0.848772
Target:  5'- aCCGCCAGCAagcGCgagcaacggGCGACCggGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCG---------UGCUGGa-CGAg -5'
21551 5' -56.5 NC_004812.1 + 48478 0.69 0.731664
Target:  5'- -aCGCCGGCc---GCGCGGCCggggGCUCg -3'
miRNA:   3'- ggGUGGUCGuguaCGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 48983 0.66 0.878933
Target:  5'- gCCCACC-GCGCcaaaAUGCGCcGCCUgGCg- -3'
miRNA:   3'- -GGGUGGuCGUG----UACGUGcUGGA-CGag -5'
21551 5' -56.5 NC_004812.1 + 49194 0.66 0.899265
Target:  5'- aCCGCCuGCA---GCugGGCaUGCUCa -3'
miRNA:   3'- gGGUGGuCGUguaCGugCUGgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 49565 0.67 0.824068
Target:  5'- gCCAuCCAGUACGaGCAgGGCCUGg-- -3'
miRNA:   3'- gGGU-GGUCGUGUaCGUgCUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 49766 0.73 0.518692
Target:  5'- aCCACCGGCGCgcccgugauguuGUGCACGgagaacacgcacuGCCUGC-Cg -3'
miRNA:   3'- gGGUGGUCGUG------------UACGUGC-------------UGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 50100 0.66 0.899265
Target:  5'- gCCGCCGGCGCcccGCGCcgcgGACCcGCg- -3'
miRNA:   3'- gGGUGGUCGUGua-CGUG----CUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 51110 0.66 0.864271
Target:  5'- aCCCACuCGGcCGCcggGCcCGgucGCCUGCUCc -3'
miRNA:   3'- -GGGUG-GUC-GUGua-CGuGC---UGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 51207 0.68 0.788725
Target:  5'- cCCCGCCgAGCGCcgGCACcggcGCCaGCg- -3'
miRNA:   3'- -GGGUGG-UCGUGuaCGUGc---UGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 51949 0.67 0.848772
Target:  5'- uCCCACCccCGCAacgacgaggagcUGaACGACCUGCUg -3'
miRNA:   3'- -GGGUGGucGUGU------------ACgUGCUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 52315 0.66 0.871709
Target:  5'- cCCCGCCGucGCccGCcgGCgACGGCCcgucGCUCu -3'
miRNA:   3'- -GGGUGGU--CG--UGuaCG-UGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 52475 0.73 0.490614
Target:  5'- gCCUACCGGCACGcgGCAUGGagucgCUGUUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUg----GACGAG- -5'
21551 5' -56.5 NC_004812.1 + 52993 0.66 0.871709
Target:  5'- gCUACCGcCGCGUGCugGccaacuUCUGCUCc -3'
miRNA:   3'- gGGUGGUcGUGUACGugCu-----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 53042 0.66 0.885246
Target:  5'- gCgCGCCAGCACGcggcagcUGCACcGCCaggcggcGCUCa -3'
miRNA:   3'- -GgGUGGUCGUGU-------ACGUGcUGGa------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 53217 0.67 0.856623
Target:  5'- gUCUACgcggagCAGguCAUGCGCcagGACCUGUUCg -3'
miRNA:   3'- -GGGUG------GUCguGUACGUG---CUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 53723 0.66 0.899265
Target:  5'- gUCCGCCGccccGCGCAcggacgugagccUGgGCGACgaGCUCc -3'
miRNA:   3'- -GGGUGGU----CGUGU------------ACgUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 54394 0.69 0.760708
Target:  5'- gCCCGCgGGCACG-GC-CGgGgCUGCUCa -3'
miRNA:   3'- -GGGUGgUCGUGUaCGuGC-UgGACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.