miRNA display CGI


Results 101 - 120 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 55275 0.71 0.63062
Target:  5'- gCCCGCCucugcggcgAGCGCcUGCACG-CCgagguggGCUCg -3'
miRNA:   3'- -GGGUGG---------UCGUGuACGUGCuGGa------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 55379 0.67 0.856623
Target:  5'- gCCCgucgagGCCGGCGCG-GCGCc-CCUGCUg -3'
miRNA:   3'- -GGG------UGGUCGUGUaCGUGcuGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 55809 0.67 0.829981
Target:  5'- aCgCGCCAGCACGcgGCGCaGCgccucuucgucgcuCUGCUCg -3'
miRNA:   3'- -GgGUGGUCGUGUa-CGUGcUG--------------GACGAG- -5'
21551 5' -56.5 NC_004812.1 + 56647 0.75 0.39144
Target:  5'- cCCCGCCGGCACGgcccaccgGCACGACgCggGCg- -3'
miRNA:   3'- -GGGUGGUCGUGUa-------CGUGCUG-Ga-CGag -5'
21551 5' -56.5 NC_004812.1 + 56791 0.68 0.797794
Target:  5'- cCUCACCGGCGCcguucGCGCGGCgCaGCUg -3'
miRNA:   3'- -GGGUGGUCGUGua---CGUGCUG-GaCGAg -5'
21551 5' -56.5 NC_004812.1 + 56922 0.66 0.885936
Target:  5'- gCCGCC-GCACG-GCGCGgACCUGg-- -3'
miRNA:   3'- gGGUGGuCGUGUaCGUGC-UGGACgag -5'
21551 5' -56.5 NC_004812.1 + 57353 0.69 0.760708
Target:  5'- gCCGCCGGUGCGUGCcucCGGCCcGgaCg -3'
miRNA:   3'- gGGUGGUCGUGUACGu--GCUGGaCgaG- -5'
21551 5' -56.5 NC_004812.1 + 57917 0.68 0.786894
Target:  5'- gCCC-CCGGCGCGgcgGUuCGACCgcgcccgccccgGCUCg -3'
miRNA:   3'- -GGGuGGUCGUGUa--CGuGCUGGa-----------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 58013 0.66 0.871709
Target:  5'- cCCCGCCcucGGCGaugAUGcCGCGcAgCUGCUCg -3'
miRNA:   3'- -GGGUGG---UCGUg--UAC-GUGC-UgGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 58692 0.67 0.848772
Target:  5'- gCCGCCcucAGCGcCAUGC-UGACCaaGCUCa -3'
miRNA:   3'- gGGUGG---UCGU-GUACGuGCUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 59204 0.69 0.751128
Target:  5'- aCCCACCAGUACGcGCccgaGGCCcGCg- -3'
miRNA:   3'- -GGGUGGUCGUGUaCGug--CUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 59396 0.66 0.878933
Target:  5'- cCCCACgCAGCGCGUgGCACcGCCa---- -3'
miRNA:   3'- -GGGUG-GUCGUGUA-CGUGcUGGacgag -5'
21551 5' -56.5 NC_004812.1 + 59451 0.66 0.87822
Target:  5'- aCCCGCUcggucgcGGCGCG-GUACGucuCCUGCa- -3'
miRNA:   3'- -GGGUGG-------UCGUGUaCGUGCu--GGACGag -5'
21551 5' -56.5 NC_004812.1 + 59933 0.67 0.856623
Target:  5'- gCCCACUcgAGCGCgGUGguC-ACCUGCUg -3'
miRNA:   3'- -GGGUGG--UCGUG-UACguGcUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 59962 0.66 0.864271
Target:  5'- gCCCACggggucgcgCGGCGCcgGCucgugGCGGCCguggUGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGUGuaCG-----UGCUGG----ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 60035 0.66 0.878933
Target:  5'- aCCAgCCGGCAgGUGUACucGCUgUGCUCg -3'
miRNA:   3'- gGGU-GGUCGUgUACGUGc-UGG-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 60846 0.66 0.899265
Target:  5'- gCUCGCagaGGCGCGUcagguucggggcGCGCGGCUggGCUCc -3'
miRNA:   3'- -GGGUGg--UCGUGUA------------CGUGCUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 60847 0.66 0.899265
Target:  5'- cUCCACgGGCucggUGUGCGCGGCCgccGCg- -3'
miRNA:   3'- -GGGUGgUCGu---GUACGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 61023 0.69 0.741444
Target:  5'- gCCgCGCCcGCGCGcggGCGCGGCCgUGCg- -3'
miRNA:   3'- -GG-GUGGuCGUGUa--CGUGCUGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 61602 0.73 0.519672
Target:  5'- gCC-CCAGCACcUGCGCGAgCgaGCUCc -3'
miRNA:   3'- gGGuGGUCGUGuACGUGCU-GgaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.