miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 150128 0.67 0.840725
Target:  5'- cCCCuuGCCuGUACccGCAgGGCCcGCUCc -3'
miRNA:   3'- -GGG--UGGuCGUGuaCGUgCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 148907 0.66 0.899265
Target:  5'- cCCCGCCGcGgACucgGCGCGACCcccGCg- -3'
miRNA:   3'- -GGGUGGU-CgUGua-CGUGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 148684 0.66 0.881761
Target:  5'- cCCgGCC-GCGCcgGCGCGcccgcagcccccgacACCUGCg- -3'
miRNA:   3'- -GGgUGGuCGUGuaCGUGC---------------UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 148280 0.69 0.721799
Target:  5'- gCCCGgCAGCGCGgcggcgGCGcCGGCCcGCUg -3'
miRNA:   3'- -GGGUgGUCGUGUa-----CGU-GCUGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 147560 0.67 0.815474
Target:  5'- uUCCggguGCCGGCGCGgccgcGUACGGCaugGCUCg -3'
miRNA:   3'- -GGG----UGGUCGUGUa----CGUGCUGga-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 146830 0.69 0.721799
Target:  5'- uCCCGCgGGaCACccGCGCGGCCgccgGCg- -3'
miRNA:   3'- -GGGUGgUC-GUGuaCGUGCUGGa---CGag -5'
21551 5' -56.5 NC_004812.1 + 146388 0.77 0.328019
Target:  5'- gCCCACuuuuccagaCAGC-CGUGCGCGGCCaGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGuGUACGUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 145778 0.66 0.864271
Target:  5'- cCCCAUCGGCGug-GCcgaaGACCUGCg- -3'
miRNA:   3'- -GGGUGGUCGUguaCGug--CUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 145625 0.68 0.779515
Target:  5'- gUCCGCCggGGCGCGccaGCACGGCCacCUCa -3'
miRNA:   3'- -GGGUGG--UCGUGUa--CGUGCUGGacGAG- -5'
21551 5' -56.5 NC_004812.1 + 145489 0.68 0.806713
Target:  5'- gCCCGCUGGCACA-GgACGAacaUCUGCa- -3'
miRNA:   3'- -GGGUGGUCGUGUaCgUGCU---GGACGag -5'
21551 5' -56.5 NC_004812.1 + 145305 0.66 0.878933
Target:  5'- cCCCGCCccgcGGCGCcccGCGCGGCgCgccucgugggcgUGCUCg -3'
miRNA:   3'- -GGGUGG----UCGUGua-CGUGCUG-G------------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 145170 0.66 0.878933
Target:  5'- --aACgGGCACGUGCACG-CCUGg-- -3'
miRNA:   3'- gggUGgUCGUGUACGUGCuGGACgag -5'
21551 5' -56.5 NC_004812.1 + 144949 0.71 0.629596
Target:  5'- gCUCGCCGGCGgacgcccCGUGCGCGGCgaGCg- -3'
miRNA:   3'- -GGGUGGUCGU-------GUACGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 144713 0.7 0.671496
Target:  5'- cCCCAUCGccgaggucgcGCACGUGCGCGGcgucacgguuucCCUGCg- -3'
miRNA:   3'- -GGGUGGU----------CGUGUACGUGCU------------GGACGag -5'
21551 5' -56.5 NC_004812.1 + 144101 0.66 0.864271
Target:  5'- cCCCGCUgccguacguGGUGC-UGCGCGACCaGCa- -3'
miRNA:   3'- -GGGUGG---------UCGUGuACGUGCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 144046 0.68 0.806713
Target:  5'- uCCCGCCA-CGCucGCuauCGACgUGCUCg -3'
miRNA:   3'- -GGGUGGUcGUGuaCGu--GCUGgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 143947 0.68 0.797794
Target:  5'- aUgAUCGGCucCAUGCGCGGCggGCUCa -3'
miRNA:   3'- gGgUGGUCGu-GUACGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 142893 0.7 0.661304
Target:  5'- uCCCGCUgaccgaggAGCACAUGCAguucguCGACC-GCUUc -3'
miRNA:   3'- -GGGUGG--------UCGUGUACGU------GCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 142305 0.66 0.878933
Target:  5'- cCCCggGCCGGCGCGgcgggGCGCGcCCUaCUg -3'
miRNA:   3'- -GGG--UGGUCGUGUa----CGUGCuGGAcGAg -5'
21551 5' -56.5 NC_004812.1 + 142302 0.69 0.741444
Target:  5'- aCCCugGCCAGCAaccccgccucCGUGgAgGACCUGCa- -3'
miRNA:   3'- -GGG--UGGUCGU----------GUACgUgCUGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.