miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 116540 0.66 0.87822
Target:  5'- gCCCGCCGcccggaaaagcGCACGaGCggccgcgGCGGCC-GCUCg -3'
miRNA:   3'- -GGGUGGU-----------CGUGUaCG-------UGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 115472 0.67 0.812863
Target:  5'- gCUCGCCGcGCGCGUGCggccgcgccgggcgGCGGCCcgGcCUCa -3'
miRNA:   3'- -GGGUGGU-CGUGUACG--------------UGCUGGa-C-GAG- -5'
21551 5' -56.5 NC_004812.1 + 114593 0.72 0.579602
Target:  5'- gCCC-CCGGUGC-UGCGCGAgCUGCg- -3'
miRNA:   3'- -GGGuGGUCGUGuACGUGCUgGACGag -5'
21551 5' -56.5 NC_004812.1 + 113952 0.66 0.871709
Target:  5'- gCCCcCCuGUACGUGCACGGCaaauacuuuuaUUGCa- -3'
miRNA:   3'- -GGGuGGuCGUGUACGUGCUG-----------GACGag -5'
21551 5' -56.5 NC_004812.1 + 111271 0.67 0.829141
Target:  5'- aCCCggGCCAGCuGC-UGUACGucaacaagaccgcCCUGCUCg -3'
miRNA:   3'- -GGG--UGGUCG-UGuACGUGCu------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 111194 0.67 0.856623
Target:  5'- gCCUACgGGCugGUGCuCGGCUgguacgucgUGUUCg -3'
miRNA:   3'- -GGGUGgUCGugUACGuGCUGG---------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 111078 0.66 0.897324
Target:  5'- uUCGCCAGCAaAUGCgacagcaaccgccuGCGGacCCUGUUCa -3'
miRNA:   3'- gGGUGGUCGUgUACG--------------UGCU--GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 111067 0.73 0.50022
Target:  5'- aCCACCcGCGCAUGCGCG-CCUaCUg -3'
miRNA:   3'- gGGUGGuCGUGUACGUGCuGGAcGAg -5'
21551 5' -56.5 NC_004812.1 + 110940 0.66 0.899265
Target:  5'- uCCCGggggggcuuCCAGCACggGCuguCGuGCCUGCg- -3'
miRNA:   3'- -GGGU---------GGUCGUGuaCGu--GC-UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 110632 0.67 0.831654
Target:  5'- -gCGCCGGaCGCGggggagcUGCGCGugCUGCa- -3'
miRNA:   3'- ggGUGGUC-GUGU-------ACGUGCugGACGag -5'
21551 5' -56.5 NC_004812.1 + 110261 0.67 0.856623
Target:  5'- cCCCGCgGuGCACGUGCGCcaagaagaucGGCCUGa-- -3'
miRNA:   3'- -GGGUGgU-CGUGUACGUG----------CUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 109807 0.69 0.760708
Target:  5'- aCCCGgaucuucgaugcCCAGCACcgGCuCGACCgggGCg- -3'
miRNA:   3'- -GGGU------------GGUCGUGuaCGuGCUGGa--CGag -5'
21551 5' -56.5 NC_004812.1 + 109427 0.66 0.864271
Target:  5'- gUCCACCucGCAUAUuaaggugacccGCGCGGCCUGg-- -3'
miRNA:   3'- -GGGUGGu-CGUGUA-----------CGUGCUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 108851 0.72 0.559408
Target:  5'- gCCC-CCAGCGCcgcgGCGCuGACCUcGUUCg -3'
miRNA:   3'- -GGGuGGUCGUGua--CGUG-CUGGA-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 108583 0.69 0.711856
Target:  5'- cCCCGCUcGgGCA-GCGCGGCCUaaccacGCUCu -3'
miRNA:   3'- -GGGUGGuCgUGUaCGUGCUGGA------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 108409 0.72 0.539416
Target:  5'- uCUCaACCGGCACGUcgGCGGCCUGCa- -3'
miRNA:   3'- -GGG-UGGUCGUGUAcgUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 107430 0.68 0.797794
Target:  5'- gCCCACCGGC-CGcGCGgCGGCCgucgcgGaCUCg -3'
miRNA:   3'- -GGGUGGUCGuGUaCGU-GCUGGa-----C-GAG- -5'
21551 5' -56.5 NC_004812.1 + 106703 0.67 0.815474
Target:  5'- aUCCAgCCGuCGC-UGCGCGugCUGCUg -3'
miRNA:   3'- -GGGU-GGUcGUGuACGUGCugGACGAg -5'
21551 5' -56.5 NC_004812.1 + 106340 0.69 0.731664
Target:  5'- aCCCGCCGGUuCGcGCcCGGCgaGCUCc -3'
miRNA:   3'- -GGGUGGUCGuGUaCGuGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 106070 0.68 0.806713
Target:  5'- --gACUGGCGCGUGgguguCGCGGCCUGCg- -3'
miRNA:   3'- gggUGGUCGUGUAC-----GUGCUGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.