miRNA display CGI


Results 61 - 80 of 318 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 153701 0.72 0.579602
Target:  5'- uUCGCCGGCGCcgucgaGUAccuCGGCCUGCUCg -3'
miRNA:   3'- gGGUGGUCGUGua----CGU---GCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 82261 0.72 0.588741
Target:  5'- cCCCACCAGCGCGcGCcGCaGGCUcgccaggUGCUCc -3'
miRNA:   3'- -GGGUGGUCGUGUaCG-UG-CUGG-------ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 152101 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144713 0.7 0.671496
Target:  5'- cCCCAUCGccgaggucgcGCACGUGCGCGGcgucacgguuucCCUGCg- -3'
miRNA:   3'- -GGGUGGU----------CGUGUACGUGCU------------GGACGag -5'
21551 5' -56.5 NC_004812.1 + 153457 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 65630 0.7 0.691775
Target:  5'- uCCCACCu-CAUcgGCGCGGCgUGCg- -3'
miRNA:   3'- -GGGUGGucGUGuaCGUGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 153134 0.7 0.691775
Target:  5'- gCCCGCCGcGCugAcgGCGCGACC-GCcCg -3'
miRNA:   3'- -GGGUGGU-CGugUa-CGUGCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 14617 0.7 0.701845
Target:  5'- aCCACUgcagccggGGCACccGCGCGGCCUccagccgguGCUCc -3'
miRNA:   3'- gGGUGG--------UCGUGuaCGUGCUGGA---------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 18337 0.7 0.701845
Target:  5'- gCCCGCagGGCGCGgcGCGCGACCgcgGC-Cg -3'
miRNA:   3'- -GGGUGg-UCGUGUa-CGUGCUGGa--CGaG- -5'
21551 5' -56.5 NC_004812.1 + 152318 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 70248 0.71 0.640858
Target:  5'- gCCCAcCCAGCGC--GCACcGCCcgGCUCu -3'
miRNA:   3'- -GGGU-GGUCGUGuaCGUGcUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 154838 0.71 0.634716
Target:  5'- uCCCGUCGGCGCGggGCGCGGCUgcgagggggcgcggGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUGGa-------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 131440 0.72 0.589758
Target:  5'- gCCGCCccggAGCGCggGgGCGACCggcgGCUCc -3'
miRNA:   3'- gGGUGG----UCGUGuaCgUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 25626 0.71 0.604027
Target:  5'- cCCCACgcaguagcggaacagCAGCGCGcGgGCGGCCgGCUCg -3'
miRNA:   3'- -GGGUG---------------GUCGUGUaCgUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 15538 0.71 0.610156
Target:  5'- cCCCGCCGGCGCGcagcgcggagagUGCGuCGuCCUGUg- -3'
miRNA:   3'- -GGGUGGUCGUGU------------ACGU-GCuGGACGag -5'
21551 5' -56.5 NC_004812.1 + 127735 0.71 0.610156
Target:  5'- gCCCgcgGCCAGCGCAcGCGCGGCgCgGCg- -3'
miRNA:   3'- -GGG---UGGUCGUGUaCGUGCUG-GaCGag -5'
21551 5' -56.5 NC_004812.1 + 14999 0.71 0.624478
Target:  5'- aCCCGCCAGCuGCAggccgcggucuucgGCGCG--CUGCUCa -3'
miRNA:   3'- -GGGUGGUCG-UGUa-------------CGUGCugGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144949 0.71 0.629596
Target:  5'- gCUCGCCGGCGgacgcccCGUGCGCGGCgaGCg- -3'
miRNA:   3'- -GGGUGGUCGU-------GUACGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 16695 0.71 0.63062
Target:  5'- cCCCgACCGGCGgGUGCGCGagcgaccgcgggGCCggucccGCUCg -3'
miRNA:   3'- -GGG-UGGUCGUgUACGUGC------------UGGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 151875 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.