miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 39356 0.69 0.711856
Target:  5'- gCCC-CCAGCACGgccUGCACGuugcggGCCaGCUg -3'
miRNA:   3'- -GGGuGGUCGUGU---ACGUGC------UGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 108583 0.69 0.711856
Target:  5'- cCCCGCUcGgGCA-GCGCGGCCUaaccacGCUCu -3'
miRNA:   3'- -GGGUGGuCgUGUaCGUGCUGGA------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 117379 0.69 0.721799
Target:  5'- gCCCGgCAGCGCGgcggcgGCGcCGGCCcGCUg -3'
miRNA:   3'- -GGGUgGUCGUGUa-----CGU-GCUGGaCGAg -5'
21551 5' -56.5 NC_004812.1 + 88469 0.69 0.725755
Target:  5'- gUCCAUgGGCAUcgGCaugcaggggcugcauACGGCCUGcCUCa -3'
miRNA:   3'- -GGGUGgUCGUGuaCG---------------UGCUGGAC-GAG- -5'
21551 5' -56.5 NC_004812.1 + 48478 0.69 0.731664
Target:  5'- -aCGCCGGCc---GCGCGGCCggggGCUCg -3'
miRNA:   3'- ggGUGGUCGuguaCGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 63313 0.69 0.731664
Target:  5'- aCCCGCCuggAGCACAUccugcucuucucGCuggguuccuGCGACCUGCcCg -3'
miRNA:   3'- -GGGUGG---UCGUGUA------------CG---------UGCUGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 106340 0.69 0.731664
Target:  5'- aCCCGCCGGUuCGcGCcCGGCgaGCUCc -3'
miRNA:   3'- -GGGUGGUCGuGUaCGuGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 152318 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 18337 0.7 0.701845
Target:  5'- gCCCGCagGGCGCGgcGCGCGACCgcgGC-Cg -3'
miRNA:   3'- -GGGUGg-UCGUGUa-CGUGCUGGa--CGaG- -5'
21551 5' -56.5 NC_004812.1 + 14617 0.7 0.701845
Target:  5'- aCCACUgcagccggGGCACccGCGCGGCCUccagccgguGCUCc -3'
miRNA:   3'- gGGUGG--------UCGUGuaCGUGCUGGA---------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 16695 0.71 0.63062
Target:  5'- cCCCgACCGGCGgGUGCGCGagcgaccgcgggGCCggucccGCUCg -3'
miRNA:   3'- -GGG-UGGUCGUgUACGUGC------------UGGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 151875 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 154838 0.71 0.634716
Target:  5'- uCCCGUCGGCGCGggGCGCGGCUgcgagggggcgcggGCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUGGa-------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 70248 0.71 0.640858
Target:  5'- gCCCAcCCAGCGC--GCACcGCCcgGCUCu -3'
miRNA:   3'- -GGGU-GGUCGUGuaCGUGcUGGa-CGAG- -5'
21551 5' -56.5 NC_004812.1 + 152101 0.7 0.651088
Target:  5'- aCCGCCGGCgACGUGgagcucgacCGCG-CCUGCUUc -3'
miRNA:   3'- gGGUGGUCG-UGUAC---------GUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 144713 0.7 0.671496
Target:  5'- cCCCAUCGccgaggucgcGCACGUGCGCGGcgucacgguuucCCUGCg- -3'
miRNA:   3'- -GGGUGGU----------CGUGUACGUGCU------------GGACGag -5'
21551 5' -56.5 NC_004812.1 + 153457 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 65630 0.7 0.691775
Target:  5'- uCCCACCu-CAUcgGCGCGGCgUGCg- -3'
miRNA:   3'- -GGGUGGucGUGuaCGUGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 153134 0.7 0.691775
Target:  5'- gCCCGCCGcGCugAcgGCGCGACC-GCcCg -3'
miRNA:   3'- -GGGUGGU-CGugUa-CGUGCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 64581 0.69 0.741444
Target:  5'- uUCACgggGGUGCA-GCACGGCCUGCUg -3'
miRNA:   3'- gGGUGg--UCGUGUaCGUGCUGGACGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.