miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 81694 0.71 0.63062
Target:  5'- aCCCGCUcGCGCGccUGCACGcgcGCCUGgaCg -3'
miRNA:   3'- -GGGUGGuCGUGU--ACGUGC---UGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 61602 0.73 0.519672
Target:  5'- gCC-CCAGCACcUGCGCGAgCgaGCUCc -3'
miRNA:   3'- gGGuGGUCGUGuACGUGCU-GgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 90412 0.79 0.253748
Target:  5'- aCCGCCAGgACAuaccccUGCAgGACCUGCUg -3'
miRNA:   3'- gGGUGGUCgUGU------ACGUgCUGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 26367 0.71 0.63062
Target:  5'- gCCGCCcccggGGCGCGUGCucuacgGCGGCCUGggCg -3'
miRNA:   3'- gGGUGG-----UCGUGUACG------UGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 27395 0.8 0.208851
Target:  5'- cUCCGCCGGCGCcgccgccGC-CGACCUGCUCu -3'
miRNA:   3'- -GGGUGGUCGUGua-----CGuGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 138026 0.69 0.731664
Target:  5'- gCCGCCGGCGCggGUGCGGCg-GCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 146388 0.77 0.328019
Target:  5'- gCCCACuuuuccagaCAGC-CGUGCGCGGCCaGCUCc -3'
miRNA:   3'- -GGGUG---------GUCGuGUACGUGCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 98301 0.69 0.721799
Target:  5'- aCC-CCGGCGCGUGgACGACgaUGUUUg -3'
miRNA:   3'- gGGuGGUCGUGUACgUGCUGg-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 136220 0.69 0.711856
Target:  5'- aCCGCCAGCuc---UACGcCCUGCUCa -3'
miRNA:   3'- gGGUGGUCGuguacGUGCuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 28128 0.7 0.701845
Target:  5'- gCCCGCCcgacgucucGGCGCuggGCGCGcagggcgugcuCCUGCUCu -3'
miRNA:   3'- -GGGUGG---------UCGUGua-CGUGCu----------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 27626 0.7 0.691775
Target:  5'- gCCCGCCGcGCugAcgGCGCGACC-GCcCg -3'
miRNA:   3'- -GGGUGGU-CGugUa-CGUGCUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 142893 0.7 0.661304
Target:  5'- uCCCGCUgaccgaggAGCACAUGCAguucguCGACC-GCUUc -3'
miRNA:   3'- -GGGUGG--------UCGUGUACGU------GCUGGaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 82418 0.7 0.651088
Target:  5'- gCCACCAGCGac--CugGACCUGCc- -3'
miRNA:   3'- gGGUGGUCGUguacGugCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 5932 0.72 0.589758
Target:  5'- gCCGCCccggAGCGCggGgGCGACCggcgGCUCc -3'
miRNA:   3'- gGGUGG----UCGUGuaCgUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 68720 0.72 0.585691
Target:  5'- gCCCGCCAGCACGcccuucauccgcaGCACGGCCaUGaugUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa------------CGUGCUGG-ACg--AG- -5'
21551 5' -56.5 NC_004812.1 + 28774 0.72 0.569483
Target:  5'- gCCCGCgCuGCGCGccuucUGCGCGcgcgcCCUGCUCg -3'
miRNA:   3'- -GGGUG-GuCGUGU-----ACGUGCu----GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 73927 0.72 0.539416
Target:  5'- gCCCAgCGGCGCcUGCuCGcCCUGCUg -3'
miRNA:   3'- -GGGUgGUCGUGuACGuGCuGGACGAg -5'
21551 5' -56.5 NC_004812.1 + 65779 0.73 0.50022
Target:  5'- -gCGCCGGCGCcgGCGCcACgUGCUCc -3'
miRNA:   3'- ggGUGGUCGUGuaCGUGcUGgACGAG- -5'
21551 5' -56.5 NC_004812.1 + 82254 0.73 0.481095
Target:  5'- cCCCGCCGcccGCGCccGCGCc-CCUGCUCg -3'
miRNA:   3'- -GGGUGGU---CGUGuaCGUGcuGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 73013 0.76 0.378133
Target:  5'- aCCCACUGGCGCccGCugcuggagcggcuauGCGACCUGCa- -3'
miRNA:   3'- -GGGUGGUCGUGuaCG---------------UGCUGGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.