miRNA display CGI


Results 61 - 80 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 82418 0.7 0.651088
Target:  5'- gCCACCAGCGac--CugGACCUGCc- -3'
miRNA:   3'- gGGUGGUCGUguacGugCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 27948 0.7 0.671496
Target:  5'- aCCC-CgAGgACGUGCGCGugCUgguGCUCu -3'
miRNA:   3'- -GGGuGgUCgUGUACGUGCugGA---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 11889 0.76 0.335516
Target:  5'- -aCGCCGcGCACGUGCGCGACCUcgGCg- -3'
miRNA:   3'- ggGUGGU-CGUGUACGUGCUGGA--CGag -5'
21551 5' -56.5 NC_004812.1 + 3859 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 52475 0.73 0.490614
Target:  5'- gCCUACCGGCACGcgGCAUGGagucgCUGUUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUg----GACGAG- -5'
21551 5' -56.5 NC_004812.1 + 49766 0.73 0.518692
Target:  5'- aCCACCGGCGCgcccgugauguuGUGCACGgagaacacgcacuGCCUGC-Cg -3'
miRNA:   3'- gGGUGGUCGUG------------UACGUGC-------------UGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 120667 0.72 0.549384
Target:  5'- gCCACCAGCgACGUGCaguucaaGCGGCCgcccgggagccgcgaGCUCg -3'
miRNA:   3'- gGGUGGUCG-UGUACG-------UGCUGGa--------------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 125141 0.72 0.569483
Target:  5'- cCCCGcaucacCCAGCGCGUGCGCuACgaGUUCg -3'
miRNA:   3'- -GGGU------GGUCGUGUACGUGcUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 131280 0.72 0.589758
Target:  5'- aCCGCCGGCugGUG-GCGACgC-GCUCg -3'
miRNA:   3'- gGGUGGUCGugUACgUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 130892 0.71 0.599945
Target:  5'- cCCCAgUGGCugAUGaacaacCACGACCUGCg- -3'
miRNA:   3'- -GGGUgGUCGugUAC------GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 129977 0.68 0.797794
Target:  5'- aCUACCAGCGCAccCACGagGCgCUGCUg -3'
miRNA:   3'- gGGUGGUCGUGUacGUGC--UG-GACGAg -5'
21551 5' -56.5 NC_004812.1 + 100041 0.68 0.788725
Target:  5'- gCCgCGCUcgAGCGCGUGCGCGccuuCCUGgUUg -3'
miRNA:   3'- -GG-GUGG--UCGUGUACGUGCu---GGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 117823 0.7 0.691775
Target:  5'- cCCCgcagACCAcGCGCGUGCGCGcggACCUGgUg -3'
miRNA:   3'- -GGG----UGGU-CGUGUACGUGC---UGGACgAg -5'
21551 5' -56.5 NC_004812.1 + 85384 0.7 0.701845
Target:  5'- cCCCGCC-GCGCccuCGCGGCCgcccGCUCg -3'
miRNA:   3'- -GGGUGGuCGUGuacGUGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 98301 0.69 0.721799
Target:  5'- aCC-CCGGCGCGUGgACGACgaUGUUUg -3'
miRNA:   3'- gGGuGGUCGUGUACgUGCUGg-ACGAG- -5'
21551 5' -56.5 NC_004812.1 + 138026 0.69 0.731664
Target:  5'- gCCGCCGGCGCggGUGCGGCg-GCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCUGgaCGag -5'
21551 5' -56.5 NC_004812.1 + 76575 0.69 0.751128
Target:  5'- aCCCcCCGcGCAUGUGCuCGGCCgucgaGCUCc -3'
miRNA:   3'- -GGGuGGU-CGUGUACGuGCUGGa----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 3151 0.69 0.760708
Target:  5'- -gCACCAGCACGcGCACGuCCUcggGgUCg -3'
miRNA:   3'- ggGUGGUCGUGUaCGUGCuGGA---CgAG- -5'
21551 5' -56.5 NC_004812.1 + 81304 0.69 0.764508
Target:  5'- -aCGCCgAGCACGUcgccuucguggcccgGCGCGACCUGggCg -3'
miRNA:   3'- ggGUGG-UCGUGUA---------------CGUGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 57917 0.68 0.786894
Target:  5'- gCCC-CCGGCGCGgcgGUuCGACCgcgcccgccccgGCUCg -3'
miRNA:   3'- -GGGuGGUCGUGUa--CGuGCUGGa-----------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.