miRNA display CGI


Results 81 - 100 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 26810 0.7 0.701845
Target:  5'- gCCugCGGCGCGcGUACGcgccCCUGCUg -3'
miRNA:   3'- gGGugGUCGUGUaCGUGCu---GGACGAg -5'
21551 5' -56.5 NC_004812.1 + 71869 0.69 0.721799
Target:  5'- cCCCugCaggAGCGCGcGCACGGCgC-GCUCg -3'
miRNA:   3'- -GGGugG---UCGUGUaCGUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 146830 0.69 0.721799
Target:  5'- uCCCGCgGGaCACccGCGCGGCCgccgGCg- -3'
miRNA:   3'- -GGGUGgUC-GUGuaCGUGCUGGa---CGag -5'
21551 5' -56.5 NC_004812.1 + 61023 0.69 0.741444
Target:  5'- gCCgCGCCcGCGCGcggGCGCGGCCgUGCg- -3'
miRNA:   3'- -GG-GUGGuCGUGUa--CGUGCUGG-ACGag -5'
21551 5' -56.5 NC_004812.1 + 1150 0.69 0.751128
Target:  5'- cCCCGgCGGCGCGaGCcCGGCCccccGCUCc -3'
miRNA:   3'- -GGGUgGUCGUGUaCGuGCUGGa---CGAG- -5'
21551 5' -56.5 NC_004812.1 + 81304 0.69 0.764508
Target:  5'- -aCGCCgAGCACGUcgccuucguggcccgGCGCGACCUGggCg -3'
miRNA:   3'- ggGUGG-UCGUGUA---------------CGUGCUGGACgaG- -5'
21551 5' -56.5 NC_004812.1 + 57917 0.68 0.786894
Target:  5'- gCCC-CCGGCGCGgcgGUuCGACCgcgcccgccccgGCUCg -3'
miRNA:   3'- -GGGuGGUCGUGUa--CGuGCUGGa-----------CGAG- -5'
21551 5' -56.5 NC_004812.1 + 130892 0.71 0.599945
Target:  5'- cCCCAgUGGCugAUGaacaacCACGACCUGCg- -3'
miRNA:   3'- -GGGUgGUCGugUAC------GUGCUGGACGag -5'
21551 5' -56.5 NC_004812.1 + 131280 0.72 0.589758
Target:  5'- aCCGCCGGCugGUG-GCGACgC-GCUCg -3'
miRNA:   3'- gGGUGGUCGugUACgUGCUG-GaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 125141 0.72 0.569483
Target:  5'- cCCCGcaucacCCAGCGCGUGCGCuACgaGUUCg -3'
miRNA:   3'- -GGGU------GGUCGUGUACGUGcUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 101043 0.68 0.806713
Target:  5'- gCUGCguGCGCGagcaGCGCGGCgaGCUCg -3'
miRNA:   3'- gGGUGguCGUGUa---CGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 4898 0.67 0.815474
Target:  5'- gCCACggCGGCGCGcGCGCG-CCgccGCUCg -3'
miRNA:   3'- gGGUG--GUCGUGUaCGUGCuGGa--CGAG- -5'
21551 5' -56.5 NC_004812.1 + 27484 0.67 0.824068
Target:  5'- gCCCGCCGGCGCGcaaGCGCaaGAgCUcCUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa--CGUG--CUgGAcGAG- -5'
21551 5' -56.5 NC_004812.1 + 111271 0.67 0.829141
Target:  5'- aCCCggGCCAGCuGC-UGUACGucaacaagaccgcCCUGCUCg -3'
miRNA:   3'- -GGG--UGGUCG-UGuACGUGCu------------GGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 12227 0.67 0.840725
Target:  5'- gCCGCCAGCA---GCACGGgCUcGCUg -3'
miRNA:   3'- gGGUGGUCGUguaCGUGCUgGA-CGAg -5'
21551 5' -56.5 NC_004812.1 + 11889 0.76 0.335516
Target:  5'- -aCGCCGcGCACGUGCGCGACCUcgGCg- -3'
miRNA:   3'- ggGUGGU-CGUGUACGUGCUGGA--CGag -5'
21551 5' -56.5 NC_004812.1 + 3859 0.75 0.39144
Target:  5'- -gCACCAGCGCGUcGCGCGugCggcgcaGCUCg -3'
miRNA:   3'- ggGUGGUCGUGUA-CGUGCugGa-----CGAG- -5'
21551 5' -56.5 NC_004812.1 + 52475 0.73 0.490614
Target:  5'- gCCUACCGGCACGcgGCAUGGagucgCUGUUCg -3'
miRNA:   3'- -GGGUGGUCGUGUa-CGUGCUg----GACGAG- -5'
21551 5' -56.5 NC_004812.1 + 49766 0.73 0.518692
Target:  5'- aCCACCGGCGCgcccgugauguuGUGCACGgagaacacgcacuGCCUGC-Cg -3'
miRNA:   3'- gGGUGGUCGUG------------UACGUGC-------------UGGACGaG- -5'
21551 5' -56.5 NC_004812.1 + 120667 0.72 0.549384
Target:  5'- gCCACCAGCgACGUGCaguucaaGCGGCCgcccgggagccgcgaGCUCg -3'
miRNA:   3'- gGGUGGUCG-UGUACG-------UGCUGGa--------------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.