miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21551 5' -56.5 NC_004812.1 + 102665 0.66 0.892715
Target:  5'- gCCCGCUcgguGUACccGUACGACgaGUUCg -3'
miRNA:   3'- -GGGUGGu---CGUGuaCGUGCUGgaCGAG- -5'
21551 5' -56.5 NC_004812.1 + 119864 0.66 0.892715
Target:  5'- aCCACCAGC---UGCggACGgGCCUGCa- -3'
miRNA:   3'- gGGUGGUCGuguACG--UGC-UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 137591 0.66 0.892715
Target:  5'- gCCGCCcGCGC-UGCGcCGGCCcGCg- -3'
miRNA:   3'- gGGUGGuCGUGuACGU-GCUGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 47308 0.66 0.892715
Target:  5'- gCCGCCGGCGC--GUACGugCggGCg- -3'
miRNA:   3'- gGGUGGUCGUGuaCGUGCugGa-CGag -5'
21551 5' -56.5 NC_004812.1 + 121071 0.66 0.892715
Target:  5'- cCCCGCCcGCGCcccccGCGCG-CCaUGCUg -3'
miRNA:   3'- -GGGUGGuCGUGua---CGUGCuGG-ACGAg -5'
21551 5' -56.5 NC_004812.1 + 133101 0.66 0.892715
Target:  5'- cCCCAgCAGCACccGCACGuagUGCg- -3'
miRNA:   3'- -GGGUgGUCGUGuaCGUGCuggACGag -5'
21551 5' -56.5 NC_004812.1 + 93373 0.66 0.892715
Target:  5'- aCCC-CCAGCAUGUGCgucaccGCGACggGCcCg -3'
miRNA:   3'- -GGGuGGUCGUGUACG------UGCUGgaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 95502 0.66 0.892715
Target:  5'- -aCGCCcGCGCGUGUcCGGCCgggggGCUg -3'
miRNA:   3'- ggGUGGuCGUGUACGuGCUGGa----CGAg -5'
21551 5' -56.5 NC_004812.1 + 141806 0.66 0.892715
Target:  5'- uUCCGCU-GCGCAUccucccCGCGGCCUGcCUCc -3'
miRNA:   3'- -GGGUGGuCGUGUAc-----GUGCUGGAC-GAG- -5'
21551 5' -56.5 NC_004812.1 + 33390 0.66 0.892715
Target:  5'- gCCGCgGgucgugacGCACAcgaacGCgACGGCCUGCUCc -3'
miRNA:   3'- gGGUGgU--------CGUGUa----CG-UGCUGGACGAG- -5'
21551 5' -56.5 NC_004812.1 + 16844 0.66 0.892715
Target:  5'- gCCGCCcuuaGGCGCGcgGUcgcgggggaccGCGACCUGgUCg -3'
miRNA:   3'- gGGUGG----UCGUGUa-CG-----------UGCUGGACgAG- -5'
21551 5' -56.5 NC_004812.1 + 130142 0.66 0.885936
Target:  5'- gCCCACacgGGCGCggGCGCG-CCgGCg- -3'
miRNA:   3'- -GGGUGg--UCGUGuaCGUGCuGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 38942 0.66 0.885936
Target:  5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3'
miRNA:   3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 116884 0.66 0.885936
Target:  5'- uCCgACCAGaacaGCcUGUACGACgUGCa- -3'
miRNA:   3'- -GGgUGGUCg---UGuACGUGCUGgACGag -5'
21551 5' -56.5 NC_004812.1 + 87580 0.66 0.885936
Target:  5'- -aCGCCcGC-CAUGCugGGCCUGg-- -3'
miRNA:   3'- ggGUGGuCGuGUACGugCUGGACgag -5'
21551 5' -56.5 NC_004812.1 + 56922 0.66 0.885936
Target:  5'- gCCGCC-GCACG-GCGCGgACCUGg-- -3'
miRNA:   3'- gGGUGGuCGUGUaCGUGC-UGGACgag -5'
21551 5' -56.5 NC_004812.1 + 8041 0.66 0.885936
Target:  5'- cUCCGCCGGCACcccccgGCGCccGGCCgGCcCg -3'
miRNA:   3'- -GGGUGGUCGUGua----CGUG--CUGGaCGaG- -5'
21551 5' -56.5 NC_004812.1 + 37492 0.66 0.885936
Target:  5'- uUCGCCGcGuCGCcgGCGCGcGCCUGCg- -3'
miRNA:   3'- gGGUGGU-C-GUGuaCGUGC-UGGACGag -5'
21551 5' -56.5 NC_004812.1 + 4634 0.66 0.885936
Target:  5'- gCCCACacgGGCGCggGCGCG-CCgGCg- -3'
miRNA:   3'- -GGGUGg--UCGUGuaCGUGCuGGaCGag -5'
21551 5' -56.5 NC_004812.1 + 80035 0.66 0.885936
Target:  5'- aCgGCCgAGCACAUGCGCGGgggguCgCUGC-Cg -3'
miRNA:   3'- gGgUGG-UCGUGUACGUGCU-----G-GACGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.