miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21552 3' -55.2 NC_004812.1 + 72491 0.66 0.943168
Target:  5'- cGGCGccucGGGGucggGGGGcgCgccGCCGCCGg -3'
miRNA:   3'- -CCGCa---CCUCua--CUCCuaGa--UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 17940 0.66 0.93899
Target:  5'- cGGgGggGGAGA-GGGGGUCgcccgggcgacggcgGCCGUCAg -3'
miRNA:   3'- -CCgCa-CCUCUaCUCCUAGa--------------UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 117611 0.66 0.933622
Target:  5'- gGGCcgggGGAGggGGGGcggCgcggGCCGCCGg -3'
miRNA:   3'- -CCGca--CCUCuaCUCCua-Ga---UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 155558 0.66 0.933622
Target:  5'- gGGCGggGGAGGgggGAGGGgcgcgCgcggGCgGCCGg -3'
miRNA:   3'- -CCGCa-CCUCUa--CUCCUa----Ga---UGgCGGU- -5'
21552 3' -55.2 NC_004812.1 + 92120 0.66 0.933622
Target:  5'- gGGCGUgcucugGGGGAUGcgggagcGGAUCUGCUuccgcauggcgaGCCAg -3'
miRNA:   3'- -CCGCA------CCUCUACu------CCUAGAUGG------------CGGU- -5'
21552 3' -55.2 NC_004812.1 + 30049 0.66 0.933622
Target:  5'- gGGCGggGGAGGgggGAGGggCgcgcgcggGCgGCCGg -3'
miRNA:   3'- -CCGCa-CCUCUa--CUCCuaGa-------UGgCGGU- -5'
21552 3' -55.2 NC_004812.1 + 148512 0.66 0.933622
Target:  5'- gGGCcgggGGAGggGGGGcggCgcggGCCGCCGg -3'
miRNA:   3'- -CCGca--CCUCuaCUCCua-Ga---UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 40764 0.66 0.932615
Target:  5'- gGGCGcgggGGAGggGAGGuacauUCgccggcggcccgGCCGCCu -3'
miRNA:   3'- -CCGCa---CCUCuaCUCCu----AGa-----------UGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 16876 0.66 0.928492
Target:  5'- cGGCGUGGcccgucgcGGGUgGAGGAuUCU-CgGCCGg -3'
miRNA:   3'- -CCGCACC--------UCUA-CUCCU-AGAuGgCGGU- -5'
21552 3' -55.2 NC_004812.1 + 50831 0.66 0.928492
Target:  5'- cGGCGacgGGAGcuaccUGuGGAUCcccGCCGCCc -3'
miRNA:   3'- -CCGCa--CCUCu----ACuCCUAGa--UGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 69927 0.66 0.923123
Target:  5'- aGGCGcUGGGGcugcGAGaGAUCguguugGCCGUCAa -3'
miRNA:   3'- -CCGC-ACCUCua--CUC-CUAGa-----UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 155849 0.67 0.917514
Target:  5'- gGGCccucagacGGGGAaGAGGGUCgcGCCGCCc -3'
miRNA:   3'- -CCGca------CCUCUaCUCCUAGa-UGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 124948 0.67 0.917514
Target:  5'- gGGCccucagacGGGGAaGAGGGUCgcGCCGCCc -3'
miRNA:   3'- -CCGca------CCUCUaCUCCUAGa-UGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 45256 0.67 0.917514
Target:  5'- gGGCGacgagcUGGGGGgcccgcGGGGUCggcGCCGCCGc -3'
miRNA:   3'- -CCGC------ACCUCUac----UCCUAGa--UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 32311 0.67 0.917514
Target:  5'- cGgG-GGAGAUGGGGGcgUCgucaccgGCCGCUAg -3'
miRNA:   3'- cCgCaCCUCUACUCCU--AGa------UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 14530 0.67 0.911667
Target:  5'- cGGCGUucccGGuGAUGAGGuag-ACCGCgAa -3'
miRNA:   3'- -CCGCA----CCuCUACUCCuagaUGGCGgU- -5'
21552 3' -55.2 NC_004812.1 + 144895 0.67 0.911667
Target:  5'- uGGUGUGGGGc-GAGGAcuccaUCUacaucACCGUCAc -3'
miRNA:   3'- -CCGCACCUCuaCUCCU-----AGA-----UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 100136 0.67 0.909867
Target:  5'- aGGCGUGGcggcgcgggcggcgGGgcGGGGcucAUCgcGCCGCCAg -3'
miRNA:   3'- -CCGCACC--------------UCuaCUCC---UAGa-UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 41732 0.67 0.905583
Target:  5'- cGGCGUGGuGGUGAcGGGggugcgCgUGCgCGCCc -3'
miRNA:   3'- -CCGCACCuCUACU-CCUa-----G-AUG-GCGGu -5'
21552 3' -55.2 NC_004812.1 + 72348 0.67 0.905583
Target:  5'- gGGgGgagggGGGGcgGGGGGUCUcCCGCg- -3'
miRNA:   3'- -CCgCa----CCUCuaCUCCUAGAuGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.