miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21552 3' -55.2 NC_004812.1 + 100458 0.69 0.840725
Target:  5'- gGGCGUGGugcGGgcguaGAGGggCgcgGCCGCCc -3'
miRNA:   3'- -CCGCACCu--CUa----CUCCuaGa--UGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 26103 0.7 0.779515
Target:  5'- -aCGUGGGGcgGcagcgcguccGGGAUCgcgACCGCCGa -3'
miRNA:   3'- ccGCACCUCuaC----------UCCUAGa--UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 155444 0.69 0.797794
Target:  5'- cGGCGacgagGGAGcgGGGGGccgggCUcgcGCCGCCGg -3'
miRNA:   3'- -CCGCa----CCUCuaCUCCUa----GA---UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 3096 0.69 0.80138
Target:  5'- cGGCGUGGGGggGAggggagggggagGGAgugguggggagggugUCgcgGCCGCCGc -3'
miRNA:   3'- -CCGCACCUCuaCU------------CCU---------------AGa--UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 76725 0.69 0.806713
Target:  5'- uGGgGUGGAGGccgGAGaGcgCgGCCGCCGu -3'
miRNA:   3'- -CCgCACCUCUa--CUC-CuaGaUGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 128452 0.69 0.806713
Target:  5'- cGCGUGGAGAgcAGGAgcacgccCUGCgCGCCc -3'
miRNA:   3'- cCGCACCUCUacUCCUa------GAUG-GCGGu -5'
21552 3' -55.2 NC_004812.1 + 71030 0.69 0.815474
Target:  5'- cGGCGUcuGGAGccgcUGGGGAgggCgGCCGCCc -3'
miRNA:   3'- -CCGCA--CCUCu---ACUCCUa--GaUGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 99909 0.69 0.832487
Target:  5'- gGGCGUGGGcagGAGGca--GCCGCCGa -3'
miRNA:   3'- -CCGCACCUcuaCUCCuagaUGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 136106 0.69 0.840725
Target:  5'- ----cGGGGGUGcccAGGGgcUCUGCCGCCAg -3'
miRNA:   3'- ccgcaCCUCUAC---UCCU--AGAUGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 107367 0.7 0.757845
Target:  5'- gGGCGgggGGAuggccggaacggugGGUGAGGGg--GCCGCCGc -3'
miRNA:   3'- -CCGCa--CCU--------------CUACUCCUagaUGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 155880 0.7 0.751128
Target:  5'- cGGCGggGGAGggGAGGggCgggGCCGgCGc -3'
miRNA:   3'- -CCGCa-CCUCuaCUCCuaGa--UGGCgGU- -5'
21552 3' -55.2 NC_004812.1 + 138416 0.7 0.751128
Target:  5'- cGCGUGGAcGcgGGGGG-CUGCCGgCGc -3'
miRNA:   3'- cCGCACCU-CuaCUCCUaGAUGGCgGU- -5'
21552 3' -55.2 NC_004812.1 + 258 0.74 0.526551
Target:  5'- cGCGggaGGAGggGGGGGUCUcccgcgcgcgcuccGCCGCCGu -3'
miRNA:   3'- cCGCa--CCUCuaCUCCUAGA--------------UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 5705 0.74 0.549384
Target:  5'- gGGCcacggGGGGgcGGGGGUCUGCCGCgGg -3'
miRNA:   3'- -CCGca---CCUCuaCUCCUAGAUGGCGgU- -5'
21552 3' -55.2 NC_004812.1 + 128603 0.74 0.559408
Target:  5'- aGGCGggcGGGGcgGGGGAggcGCCGCCGa -3'
miRNA:   3'- -CCGCa--CCUCuaCUCCUagaUGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 9999 0.73 0.579601
Target:  5'- cGCGUGGAG--GAGGugCUGCCGCCc -3'
miRNA:   3'- cCGCACCUCuaCUCCuaGAUGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 6536 0.72 0.640857
Target:  5'- gGGCGgGGGGccGAGGGggCUGCCGCgAg -3'
miRNA:   3'- -CCGCaCCUCuaCUCCUa-GAUGGCGgU- -5'
21552 3' -55.2 NC_004812.1 + 71781 0.71 0.691775
Target:  5'- aGGCGgGGGGgcGGGGGUCgccgaaGCCGUCGu -3'
miRNA:   3'- -CCGCaCCUCuaCUCCUAGa-----UGGCGGU- -5'
21552 3' -55.2 NC_004812.1 + 99024 0.71 0.701845
Target:  5'- gGGCGUGGuGAUggacGAGGGaC-ACCGCCu -3'
miRNA:   3'- -CCGCACCuCUA----CUCCUaGaUGGCGGu -5'
21552 3' -55.2 NC_004812.1 + 71847 0.71 0.718823
Target:  5'- uGGCGUcuccggcccgGGGGAUGGGGGUCgGCCagguuggugagagaGCCGa -3'
miRNA:   3'- -CCGCA----------CCUCUACUCCUAGaUGG--------------CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.