miRNA display CGI

Results 1 - 20 of 1063 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21552	5'	-64.9	NC_004812.1	+	103505	0.66	0.571757
	Target:  5'- cGCGACGGccgcgcggagcaUcuccugcaggucccuGGGGCgGCCCUUgaGCGCCg -3' miRNA:   3'- aCGCUGCC------------G---------------CCCUG-CGGGAGg-CGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	120888	0.66	0.571757
	Target:  5'- gGCGG-GGCGGaGACGCgggggucgcgUCUCCcgcauaaaaggcccgGCGCCg -3' miRNA:   3'- aCGCUgCCGCC-CUGCG----------GGAGG---------------CGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	19752	0.66	0.567993
	Target:  5'- cGCGACGucGUcgGGGGCGUCgUCgGUGUCu -3' miRNA:   3'- aCGCUGC--CG--CCCUGCGGgAGgCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	152952	0.66	0.567993
	Target:  5'- gGCGcCgGGCGGGACuugggcgccggGCCUgggCUGgGCCu -3' miRNA:   3'- aCGCuG-CCGCCCUG-----------CGGGa--GGCgCGG- -5'
21552	5'	-64.9	NC_004812.1	+	46635	0.66	0.567993
	Target:  5'- gGuCGAC-GCGGG-CGCCCggaaaCagcaGCGCCa -3' miRNA:   3'- aC-GCUGcCGCCCuGCGGGa----Gg---CGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	106316	0.66	0.567993
	Target:  5'- gGUGuuGuCGGGcgucuCGCCCUCCuccagGCGCCg -3' miRNA:   3'- aCGCugCcGCCCu----GCGGGAGG-----CGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	76396	0.66	0.567993
	Target:  5'- cGCGAuggccCGGCGGG-CGCCgagggccagCCGgGUCg -3' miRNA:   3'- aCGCU-----GCCGCCCuGCGGga-------GGCgCGG- -5'
21552	5'	-64.9	NC_004812.1	+	107315	0.66	0.567993
	Target:  5'- gGCGuucCGGgGGGGCGgCCgCgGuCGCCu -3' miRNA:   3'- aCGCu--GCCgCCCUGCgGGaGgC-GCGG- -5'
21552	5'	-64.9	NC_004812.1	+	79369	0.66	0.567993
	Target:  5'- cGCGAgGGCa--GCGCCCcacacccCCGCGUCg -3' miRNA:   3'- aCGCUgCCGcccUGCGGGa------GGCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	12629	0.66	0.567993
	Target:  5'- cGCcGCGaGCGGucGGCGCCUUaaaugcccaucCCGCGCUc -3' miRNA:   3'- aCGcUGC-CGCC--CUGCGGGA-----------GGCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	136168	0.66	0.567993
	Target:  5'- aGCGGguUGGCGuccgcGGACGUCCggggcagggCCGCGUg -3' miRNA:   3'- aCGCU--GCCGC-----CCUGCGGGa--------GGCGCGg -5'
21552	5'	-64.9	NC_004812.1	+	62919	0.66	0.567993
	Target:  5'- cGCG-CGGaaCGGGcGCGCCCUgUCGCaCCu -3' miRNA:   3'- aCGCuGCC--GCCC-UGCGGGA-GGCGcGG- -5'
21552	5'	-64.9	NC_004812.1	+	45709	0.66	0.567993
	Target:  5'- gGCGcCGGgcgcucauCGGGACGgCCUgC-CGCCg -3' miRNA:   3'- aCGCuGCC--------GCCCUGCgGGAgGcGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	138040	0.66	0.567993
	Target:  5'- gGCGAacgcgGGCGGGcaccACGgcuCCCggcaaCGCGCCg -3' miRNA:   3'- aCGCUg----CCGCCC----UGC---GGGag---GCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	68185	0.66	0.567993
	Target:  5'- gGCGGCacuGGgGGGugGgCUgggCCGUGCg -3' miRNA:   3'- aCGCUG---CCgCCCugCgGGa--GGCGCGg -5'
21552	5'	-64.9	NC_004812.1	+	122051	0.66	0.567993
	Target:  5'- gGCGcCgGGCGGGACuugggcgccggGCCUgggCUGgGCCu -3' miRNA:   3'- aCGCuG-CCGCCCUG-----------CGGGa--GGCgCGG- -5'
21552	5'	-64.9	NC_004812.1	+	14184	0.66	0.567993
	Target:  5'- gGcCGACGcGCGGacaacuGCGUCg-CCGCGCCa -3' miRNA:   3'- aC-GCUGC-CGCCc-----UGCGGgaGGCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	10526	0.66	0.567993
	Target:  5'- gGCGGgGGCGGGAaagUCUCgGCGUg -3' miRNA:   3'- aCGCUgCCGCCCUgcgGGAGgCGCGg -5'
21552	5'	-64.9	NC_004812.1	+	79789	0.66	0.567993
	Target:  5'- cGCGcccccggaGGUGcGcGcCGCCCUgCGCGCCg -3' miRNA:   3'- aCGCug------CCGC-C-CuGCGGGAgGCGCGG- -5'
21552	5'	-64.9	NC_004812.1	+	84717	0.66	0.567993
	Target:  5'- cGCgucgGACGGCGGcuccgagcGCGCCgUgCGCGCg -3' miRNA:   3'- aCG----CUGCCGCCc-------UGCGGgAgGCGCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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