miRNA display CGI


Results 1 - 20 of 1063 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21552 5' -64.9 NC_004812.1 + 92760 0.66 0.52157
Target:  5'- aGUGGC-GCGGGcCGCCCgCgGCGUUc -3'
miRNA:   3'- aCGCUGcCGCCCuGCGGGaGgCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 69520 0.66 0.529827
Target:  5'- --aGACGGaggccgcCGGGuccggcCGCCCccCCGCGCCc -3'
miRNA:   3'- acgCUGCC-------GCCCu-----GCGGGa-GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 13066 0.66 0.530748
Target:  5'- aGCGACaggagcucGCGGGucaGCGCCC-CCauGCGCUc -3'
miRNA:   3'- aCGCUGc-------CGCCC---UGCGGGaGG--CGCGG- -5'
21552 5' -64.9 NC_004812.1 + 106409 0.66 0.52157
Target:  5'- gGCcucACGGCcccGGCGuUCCUCUGCGCCg -3'
miRNA:   3'- aCGc--UGCCGcc-CUGC-GGGAGGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 112440 0.66 0.520656
Target:  5'- cGCaGAcCGGCucGGcccccgaGCGCCCUCCG-GCCg -3'
miRNA:   3'- aCG-CU-GCCGc-CC-------UGCGGGAGGCgCGG- -5'
21552 5' -64.9 NC_004812.1 + 154192 0.66 0.52157
Target:  5'- cUGCG-CGcGCuGGGgGCUggCCGCGCCg -3'
miRNA:   3'- -ACGCuGC-CGcCCUgCGGgaGGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 68572 0.66 0.52157
Target:  5'- cGCGgacgggaccGCGG-GGGACGCCg-CCGUGUg -3'
miRNA:   3'- aCGC---------UGCCgCCCUGCGGgaGGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 68428 0.66 0.530748
Target:  5'- cGCGGCcgagaGGaGGGACGCCC-CgGgGUCg -3'
miRNA:   3'- aCGCUG-----CCgCCCUGCGGGaGgCgCGG- -5'
21552 5' -64.9 NC_004812.1 + 73896 0.66 0.52157
Target:  5'- gGCGGCcGCGGc-CGCCgagUCGCGCCa -3'
miRNA:   3'- aCGCUGcCGCCcuGCGGga-GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 16715 0.66 0.52157
Target:  5'- aGCGACcGCGGGGCcggucccgcucGCCCgucgacgCaggGCGCCc -3'
miRNA:   3'- aCGCUGcCGCCCUG-----------CGGGa------Gg--CGCGG- -5'
21552 5' -64.9 NC_004812.1 + 15116 0.66 0.530748
Target:  5'- gUGCGcCGGUacGGcGGCGCCC-CCGaCGgCg -3'
miRNA:   3'- -ACGCuGCCG--CC-CUGCGGGaGGC-GCgG- -5'
21552 5' -64.9 NC_004812.1 + 111030 0.66 0.530748
Target:  5'- aGCGugGGCGcgaGGaACGgCCUgUGCGUg -3'
miRNA:   3'- aCGCugCCGC---CC-UGCgGGAgGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 69737 0.66 0.530748
Target:  5'- gGCGGCGGUccggcaccGGGGgGCaCCagugcgCuCGCGCCu -3'
miRNA:   3'- aCGCUGCCG--------CCCUgCG-GGa-----G-GCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 58344 0.66 0.520656
Target:  5'- cGCGuccaccaGCGcGCGGGuccCGgCCUccagggCCGCGCCg -3'
miRNA:   3'- aCGC-------UGC-CGCCCu--GCgGGA------GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 119925 0.66 0.52157
Target:  5'- aGCccgaGGCGGG-CGCCgaccCCGCGCUg -3'
miRNA:   3'- aCGcug-CCGCCCuGCGGga--GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 11588 0.66 0.52157
Target:  5'- cGCGcucgccggggacACGGCGGGcGgGCUCggCGUGCCg -3'
miRNA:   3'- aCGC------------UGCCGCCC-UgCGGGagGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 123353 0.66 0.52157
Target:  5'- cGCcucucucCGGCGGGGacgcgcccccCGUCCUCCGCGg- -3'
miRNA:   3'- aCGcu-----GCCGCCCU----------GCGGGAGGCGCgg -5'
21552 5' -64.9 NC_004812.1 + 60394 0.66 0.52157
Target:  5'- cGCcagGugGGCGGc-CGCCCgcgcgaCCGCGUCc -3'
miRNA:   3'- aCG---CugCCGCCcuGCGGGa-----GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 57874 0.66 0.530748
Target:  5'- gGCG-CgGGCGGGaACGCCaucauCUCCuCGCUg -3'
miRNA:   3'- aCGCuG-CCGCCC-UGCGG-----GAGGcGCGG- -5'
21552 5' -64.9 NC_004812.1 + 120888 0.66 0.571757
Target:  5'- gGCGG-GGCGGaGACGCgggggucgcgUCUCCcgcauaaaaggcccgGCGCCg -3'
miRNA:   3'- aCGCUgCCGCC-CUGCG----------GGAGG---------------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.