miRNA display CGI


Results 21 - 40 of 1063 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21552 5' -64.9 NC_004812.1 + 76396 0.66 0.567993
Target:  5'- cGCGAuggccCGGCGGG-CGCCgagggccagCCGgGUCg -3'
miRNA:   3'- aCGCU-----GCCGCCCuGCGGga-------GGCgCGG- -5'
21552 5' -64.9 NC_004812.1 + 14184 0.66 0.567993
Target:  5'- gGcCGACGcGCGGacaacuGCGUCg-CCGCGCCa -3'
miRNA:   3'- aC-GCUGC-CGCCc-----UGCGGgaGGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 46909 0.66 0.567993
Target:  5'- gGCG-CGGCGGc-CGCCg-CCGCGgCg -3'
miRNA:   3'- aCGCuGCCGCCcuGCGGgaGGCGCgG- -5'
21552 5' -64.9 NC_004812.1 + 136168 0.66 0.567993
Target:  5'- aGCGGguUGGCGuccgcGGACGUCCggggcagggCCGCGUg -3'
miRNA:   3'- aCGCU--GCCGC-----CCUGCGGGa--------GGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 126314 0.66 0.567993
Target:  5'- cGCGGaGGUccccaGGGAC-CCCUCgGCGUg -3'
miRNA:   3'- aCGCUgCCG-----CCCUGcGGGAGgCGCGg -5'
21552 5' -64.9 NC_004812.1 + 79369 0.66 0.567993
Target:  5'- cGCGAgGGCa--GCGCCCcacacccCCGCGUCg -3'
miRNA:   3'- aCGCUgCCGcccUGCGGGa------GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 14476 0.66 0.567053
Target:  5'- cGCGGgGGCGGGgcccuggauggugACGUcggaggCCUCCggaacGUGCCa -3'
miRNA:   3'- aCGCUgCCGCCC-------------UGCG------GGAGG-----CGCGG- -5'
21552 5' -64.9 NC_004812.1 + 2747 0.66 0.567053
Target:  5'- cGCGcGCGGCGGGccagcggACGUCgCaCUGCGCg -3'
miRNA:   3'- aCGC-UGCCGCCC-------UGCGG-GaGGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 128255 0.66 0.567052
Target:  5'- cGCGcGCGGCGGGccagcggACGUCgCaCUGCGCg -3'
miRNA:   3'- aCGC-UGCCGCCC-------UGCGG-GaGGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 110510 0.66 0.567052
Target:  5'- gGCuGGCGuGCGGG-CGCCUgcugCCGgucuucgugguccCGCCg -3'
miRNA:   3'- aCG-CUGC-CGCCCuGCGGGa---GGC-------------GCGG- -5'
21552 5' -64.9 NC_004812.1 + 95372 0.66 0.565174
Target:  5'- gGCGAC-GCGGGgacgagcgacucgcGCGaCCCggaagcCCGCGCg -3'
miRNA:   3'- aCGCUGcCGCCC--------------UGC-GGGa-----GGCGCGg -5'
21552 5' -64.9 NC_004812.1 + 126633 0.66 0.565174
Target:  5'- gGCGACGGCagccuccGGcagcugcuguucgcGCGCCCcgUCGaCGCCg -3'
miRNA:   3'- aCGCUGCCGc------CC--------------UGCGGGa-GGC-GCGG- -5'
21552 5' -64.9 NC_004812.1 + 106229 0.66 0.565174
Target:  5'- gGCGACGGCGGcgucGAgGCUCgUgucguaggucacgaUCGUGCCg -3'
miRNA:   3'- aCGCUGCCGCC----CUgCGGG-A--------------GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 56507 0.66 0.562358
Target:  5'- gUGgGACgggucgcuaaucucgGGgGGGACGacgagccccgacCCCaCCGCGCCa -3'
miRNA:   3'- -ACgCUG---------------CCgCCCUGC------------GGGaGGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 149315 0.66 0.558611
Target:  5'- gGCGACgGGCGacaGGCGgCCUCacaCGCgGCCg -3'
miRNA:   3'- aCGCUG-CCGCc--CUGCgGGAG---GCG-CGG- -5'
21552 5' -64.9 NC_004812.1 + 122821 0.66 0.558611
Target:  5'- gGCGGCGcaGCGGGcgAUGUCgUCgGcCGCCg -3'
miRNA:   3'- aCGCUGC--CGCCC--UGCGGgAGgC-GCGG- -5'
21552 5' -64.9 NC_004812.1 + 62033 0.66 0.558611
Target:  5'- gGCGGCcucgGGCGgaGGAgGCCCcgagCCcCGCCa -3'
miRNA:   3'- aCGCUG----CCGC--CCUgCGGGa---GGcGCGG- -5'
21552 5' -64.9 NC_004812.1 + 57687 0.66 0.558611
Target:  5'- cGCGGuCGaGCGccaGGAgCGCUUcugCCGCGCCa -3'
miRNA:   3'- aCGCU-GC-CGC---CCU-GCGGGa--GGCGCGG- -5'
21552 5' -64.9 NC_004812.1 + 137857 0.66 0.558611
Target:  5'- gGCGACGGaCGaGGuGCGCCgCgaguaCCcCGCCg -3'
miRNA:   3'- aCGCUGCC-GC-CC-UGCGG-Ga----GGcGCGG- -5'
21552 5' -64.9 NC_004812.1 + 44152 0.66 0.558611
Target:  5'- cGCcgGACGGCcggaGGGCGCUCgggggCCGaGCCg -3'
miRNA:   3'- aCG--CUGCCGc---CCUGCGGGa----GGCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.