miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21553 3' -61.5 NC_004812.1 + 128371 0.66 0.730446
Target:  5'- gCGUCCaCGacgACgaGGCgGCGGcCGGCg -3'
miRNA:   3'- -GCAGG-GCca-UGgaCCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 2863 0.66 0.730446
Target:  5'- gCGUCCaCGacgACgaGGCgGCGGcCGGCg -3'
miRNA:   3'- -GCAGG-GCca-UGgaCCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 129755 0.66 0.730446
Target:  5'- gCGUCCCGGUGuCCcGGuuuCCGgGGUuccaguacuuUGACa -3'
miRNA:   3'- -GCAGGGCCAU-GGaCC---GGCgCCA----------GCUG- -5'
21553 3' -61.5 NC_004812.1 + 75811 0.66 0.730446
Target:  5'- uGUCCCcccaGG-GCCUGGCCGUcaugcuggggauGGaCGGCu -3'
miRNA:   3'- gCAGGG----CCaUGGACCGGCG------------CCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 36117 0.66 0.723874
Target:  5'- gGUCCCcguacgagaagcgcuGGgagGCCcacggguUGGCCGUGG-CGGCg -3'
miRNA:   3'- gCAGGG---------------CCa--UGG-------ACCGGCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 112318 0.66 0.721046
Target:  5'- gCGcCUCGGgcggCUGGCCGCGGa-GGCg -3'
miRNA:   3'- -GCaGGGCCaug-GACCGGCGCCagCUG- -5'
21553 3' -61.5 NC_004812.1 + 4744 0.66 0.721046
Target:  5'- gCGcCCCGGg----GGCgGCGGcUCGGCg -3'
miRNA:   3'- -GCaGGGCCauggaCCGgCGCC-AGCUG- -5'
21553 3' -61.5 NC_004812.1 + 114663 0.66 0.721046
Target:  5'- gCGgCCCGccACCgGGUCGCGGUCcaggGGCg -3'
miRNA:   3'- -GCaGGGCcaUGGaCCGGCGCCAG----CUG- -5'
21553 3' -61.5 NC_004812.1 + 103837 0.66 0.721046
Target:  5'- -cUCgCGGUACa-GGUCGgGGUUGGCg -3'
miRNA:   3'- gcAGgGCCAUGgaCCGGCgCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 130252 0.66 0.721046
Target:  5'- gCGcCCCGGg----GGCgGCGGcUCGGCg -3'
miRNA:   3'- -GCaGGGCCauggaCCGgCGCC-AGCUG- -5'
21553 3' -61.5 NC_004812.1 + 104052 0.66 0.721046
Target:  5'- gGcCUCGGggACgUgGGCCgcGCGGUCGGCa -3'
miRNA:   3'- gCaGGGCCa-UGgA-CCGG--CGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 79222 0.66 0.721046
Target:  5'- --cCCCGccgACCUGGCCGCcuGGcUGGCg -3'
miRNA:   3'- gcaGGGCca-UGGACCGGCG--CCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 43541 0.66 0.721046
Target:  5'- uGUCgCGGcucgcUGCC--GCCGCGGcCGACg -3'
miRNA:   3'- gCAGgGCC-----AUGGacCGGCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 77562 0.66 0.721046
Target:  5'- gCGUCCgGccGCUgGGCCGCGGccccCGACc -3'
miRNA:   3'- -GCAGGgCcaUGGaCCGGCGCCa---GCUG- -5'
21553 3' -61.5 NC_004812.1 + 61984 0.66 0.717267
Target:  5'- uCGUCgCCGGUcccaacgcccgGCCggugcgcgggacaGGCCGCGG-CGAg -3'
miRNA:   3'- -GCAG-GGCCA-----------UGGa------------CCGGCGCCaGCUg -5'
21553 3' -61.5 NC_004812.1 + 147935 0.66 0.711577
Target:  5'- cCGgCCUGGcACCgGGCCGCcGGUUG-Ca -3'
miRNA:   3'- -GCaGGGCCaUGGaCCGGCG-CCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 138778 0.66 0.711577
Target:  5'- uCGaUCCCGGccGCCUgGGUCGUGGccgCGAa -3'
miRNA:   3'- -GC-AGGGCCa-UGGA-CCGGCGCCa--GCUg -5'
21553 3' -61.5 NC_004812.1 + 48145 0.66 0.711577
Target:  5'- cCGUCCucgaggcgCGGcGCCgGGCgGCGGccgCGGCg -3'
miRNA:   3'- -GCAGG--------GCCaUGGaCCGgCGCCa--GCUG- -5'
21553 3' -61.5 NC_004812.1 + 56112 0.66 0.711577
Target:  5'- gCGUCCaUGGUcgACUggUGGgCGCGGUCGcCc -3'
miRNA:   3'- -GCAGG-GCCA--UGG--ACCgGCGCCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 117034 0.66 0.711577
Target:  5'- cCGgCCUGGcACCgGGCCGCcGGUUG-Ca -3'
miRNA:   3'- -GCaGGGCCaUGGaCCGGCG-CCAGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.