miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21553 3' -61.5 NC_004812.1 + 912 0.66 0.692464
Target:  5'- gGUCgCCGGggguCCUGGggguCCGgGGUCGcCg -3'
miRNA:   3'- gCAG-GGCCau--GGACC----GGCgCCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 125184 0.66 0.673168
Target:  5'- aGggCCCGGgcgcgcggGCCcgccccGGCCGCGG-CGGCc -3'
miRNA:   3'- gCa-GGGCCa-------UGGa-----CCGGCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 48145 0.66 0.711577
Target:  5'- cCGUCCucgaggcgCGGcGCCgGGCgGCGGccgCGGCg -3'
miRNA:   3'- -GCAGG--------GCCaUGGaCCGgCGCCa--GCUG- -5'
21553 3' -61.5 NC_004812.1 + 127644 0.66 0.692464
Target:  5'- aGUCCgGGgagGCCccgcgggcggGGCuCGCGG-CGGCg -3'
miRNA:   3'- gCAGGgCCa--UGGa---------CCG-GCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 41952 0.66 0.673168
Target:  5'- gCGaCCCGGUGgCgGGCCGCac-CGACg -3'
miRNA:   3'- -GCaGGGCCAUgGaCCGGCGccaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 35806 0.66 0.673168
Target:  5'- gCGUCUCGGgGCCguggGGCUGgGcGUCGcCg -3'
miRNA:   3'- -GCAGGGCCaUGGa---CCGGCgC-CAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 127982 0.66 0.682835
Target:  5'- aGUCCgGGgcGCC-GGCgGCGG-CGGCc -3'
miRNA:   3'- gCAGGgCCa-UGGaCCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 149122 0.66 0.672199
Target:  5'- gCGcCCCGGUcguccgcgcggccGCCggGGCgCGCGGUCcccGCg -3'
miRNA:   3'- -GCaGGGCCA-------------UGGa-CCG-GCGCCAGc--UG- -5'
21553 3' -61.5 NC_004812.1 + 76571 0.66 0.682835
Target:  5'- -cUCUCGGga-CUGGCCGUGGccaCGGCc -3'
miRNA:   3'- gcAGGGCCaugGACCGGCGCCa--GCUG- -5'
21553 3' -61.5 NC_004812.1 + 108474 0.66 0.682835
Target:  5'- -aUCCUGGcGCUgacGGUCGCGGUCaACg -3'
miRNA:   3'- gcAGGGCCaUGGa--CCGGCGCCAGcUG- -5'
21553 3' -61.5 NC_004812.1 + 75563 0.66 0.682835
Target:  5'- -cUCCaGGUACUcggcgUGGCCGCGG-CGGa -3'
miRNA:   3'- gcAGGgCCAUGG-----ACCGGCGCCaGCUg -5'
21553 3' -61.5 NC_004812.1 + 152800 0.66 0.692464
Target:  5'- gCGUCgCCGGcggcGCCgaGGCCGCcGUCGcCg -3'
miRNA:   3'- -GCAG-GGCCa---UGGa-CCGGCGcCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 2863 0.66 0.730446
Target:  5'- gCGUCCaCGacgACgaGGCgGCGGcCGGCg -3'
miRNA:   3'- -GCAGG-GCca-UGgaCCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 15915 0.66 0.702047
Target:  5'- --aCCUcaucgACUcGGCCGCGGUCGACc -3'
miRNA:   3'- gcaGGGcca--UGGaCCGGCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 92275 0.66 0.702047
Target:  5'- cCGaCUCGGgGCCccGGCCGCGGcuucagacgUCGGCc -3'
miRNA:   3'- -GCaGGGCCaUGGa-CCGGCGCC---------AGCUG- -5'
21553 3' -61.5 NC_004812.1 + 24511 0.66 0.692464
Target:  5'- --cCCCGc-GCCgcgggGGCUGCGGUCGGg -3'
miRNA:   3'- gcaGGGCcaUGGa----CCGGCGCCAGCUg -5'
21553 3' -61.5 NC_004812.1 + 138778 0.66 0.711577
Target:  5'- uCGaUCCCGGccGCCUgGGUCGUGGccgCGAa -3'
miRNA:   3'- -GC-AGGGCCa-UGGA-CCGGCGCCa--GCUg -5'
21553 3' -61.5 NC_004812.1 + 129033 0.66 0.702047
Target:  5'- gGcCCCGGggGCggGGCCGCGG-CGcCg -3'
miRNA:   3'- gCaGGGCCa-UGgaCCGGCGCCaGCuG- -5'
21553 3' -61.5 NC_004812.1 + 964 0.66 0.692464
Target:  5'- gGUCgCCGGggguCCUGGggguCCGgGGUCGcCg -3'
miRNA:   3'- gCAG-GGCCau--GGACC----GGCgCCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 73113 0.66 0.673168
Target:  5'- gGUCCauaaCGGUcACgCgGGCCGCGGgaucCGGCg -3'
miRNA:   3'- gCAGG----GCCA-UG-GaCCGGCGCCa---GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.