miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21553 3' -61.5 NC_004812.1 + 8230 1.09 0.001081
Target:  5'- uCGUCCCGGUACCUGGCCGCGGUCGACg -3'
miRNA:   3'- -GCAGGGCCAUGGACCGGCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 98422 0.8 0.122595
Target:  5'- gCGUCUCGGUGCggcGGCCGCGGggCGGCa -3'
miRNA:   3'- -GCAGGGCCAUGga-CCGGCGCCa-GCUG- -5'
21553 3' -61.5 NC_004812.1 + 137227 0.77 0.194556
Target:  5'- gCGUCCUGGUGCCccggGGCuacgaguacuuCGCGGUCGGg -3'
miRNA:   3'- -GCAGGGCCAUGGa---CCG-----------GCGCCAGCUg -5'
21553 3' -61.5 NC_004812.1 + 76082 0.76 0.202545
Target:  5'- gCGUCCCGGUccgcgagcuucuccGCCaGGuCCGCGG-CGGCg -3'
miRNA:   3'- -GCAGGGCCA--------------UGGaCC-GGCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 145925 0.75 0.251412
Target:  5'- --cCCCGuGUACCUGGUgaCGUGGUUGGCg -3'
miRNA:   3'- gcaGGGC-CAUGGACCG--GCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 137539 0.74 0.263115
Target:  5'- uCGgCCCGGcgcggGCCUgGGCCGCGGucUCGGCc -3'
miRNA:   3'- -GCaGGGCCa----UGGA-CCGGCGCC--AGCUG- -5'
21553 3' -61.5 NC_004812.1 + 57095 0.74 0.287843
Target:  5'- cCGUCCguCGGcgACgC-GGCCGCGGUCGGCc -3'
miRNA:   3'- -GCAGG--GCCa-UG-GaCCGGCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 98936 0.73 0.314363
Target:  5'- cCGgcgCCCGGaagagACCcggGGCCGCGGaCGACc -3'
miRNA:   3'- -GCa--GGGCCa----UGGa--CCGGCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 107316 0.73 0.3283
Target:  5'- gCGUUCCGGgggGgC-GGCCGCGGUCGcCu -3'
miRNA:   3'- -GCAGGGCCa--UgGaCCGGCGCCAGCuG- -5'
21553 3' -61.5 NC_004812.1 + 154015 0.72 0.357528
Target:  5'- aGU-CCGGUGCCgucGGCgGCGG-CGGCg -3'
miRNA:   3'- gCAgGGCCAUGGa--CCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 123114 0.72 0.357528
Target:  5'- aGU-CCGGUGCCgucGGCgGCGG-CGGCg -3'
miRNA:   3'- gCAgGGCCAUGGa--CCGgCGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 138251 0.72 0.365114
Target:  5'- gCGggCCCGGcGCCgccggUGGCCGauGUCGACa -3'
miRNA:   3'- -GCa-GGGCCaUGG-----ACCGGCgcCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 81124 0.72 0.365114
Target:  5'- gCGUgCCGcuggACCUGGCCGCGGcCG-Cg -3'
miRNA:   3'- -GCAgGGCca--UGGACCGGCGCCaGCuG- -5'
21553 3' -61.5 NC_004812.1 + 40227 0.72 0.388532
Target:  5'- cCG-CCCGc-GCCUGGCCgGCGG-CGACg -3'
miRNA:   3'- -GCaGGGCcaUGGACCGG-CGCCaGCUG- -5'
21553 3' -61.5 NC_004812.1 + 138246 0.71 0.396554
Target:  5'- gCGggCCCGcGUacGCCgcggcGGCCGCGGUCGcGCg -3'
miRNA:   3'- -GCa-GGGC-CA--UGGa----CCGGCGCCAGC-UG- -5'
21553 3' -61.5 NC_004812.1 + 81601 0.71 0.396554
Target:  5'- cCGagCUGG-ACCaGGCgGCGGUCGACu -3'
miRNA:   3'- -GCagGGCCaUGGaCCGgCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 88988 0.71 0.396554
Target:  5'- gCGcUgCC-GUGCCUGGCCGCGGaccacccgcuUCGGCg -3'
miRNA:   3'- -GC-AgGGcCAUGGACCGGCGCC----------AGCUG- -5'
21553 3' -61.5 NC_004812.1 + 98383 0.71 0.412915
Target:  5'- gGUCCuCGGgcgGCgCggcGGCCGCGGggCGGCg -3'
miRNA:   3'- gCAGG-GCCa--UG-Ga--CCGGCGCCa-GCUG- -5'
21553 3' -61.5 NC_004812.1 + 57047 0.71 0.42125
Target:  5'- aGggCCaGGagcuucUGCCgGGCCGCGGUCGGCu -3'
miRNA:   3'- gCa-GGgCC------AUGGaCCGGCGCCAGCUG- -5'
21553 3' -61.5 NC_004812.1 + 45565 0.71 0.42125
Target:  5'- gGUCCCGGUACCacgagucGGCC-UGGgCGACc -3'
miRNA:   3'- gCAGGGCCAUGGa------CCGGcGCCaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.