miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21553 5' -55.1 NC_004812.1 + 100691 0.66 0.954153
Target:  5'- -gGCCACC--UCGCCaGAGG-ACCAGa -3'
miRNA:   3'- cgUGGUGGguAGCGG-CUCUaUGGUCc -5'
21553 5' -55.1 NC_004812.1 + 95582 0.66 0.954153
Target:  5'- uCGCCGCUCGUCGUCGGccucACCGuGGa -3'
miRNA:   3'- cGUGGUGGGUAGCGGCUcua-UGGU-CC- -5'
21553 5' -55.1 NC_004812.1 + 18243 0.66 0.954153
Target:  5'- cGCGCCcccGCCCGUC-CCGcGGaACCGGcGg -3'
miRNA:   3'- -CGUGG---UGGGUAGcGGCuCUaUGGUC-C- -5'
21553 5' -55.1 NC_004812.1 + 31295 0.66 0.954153
Target:  5'- gGCGCC-CUCGgaacacgcgcUCGCCGAGGaACgaCAGGa -3'
miRNA:   3'- -CGUGGuGGGU----------AGCGGCUCUaUG--GUCC- -5'
21553 5' -55.1 NC_004812.1 + 15084 0.66 0.954153
Target:  5'- gGCG-CAgUCGUCGCuCGugcGGUACCAGGc -3'
miRNA:   3'- -CGUgGUgGGUAGCG-GCu--CUAUGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 101852 0.66 0.954153
Target:  5'- aGCGCCGCcguguCCAcCGCCcccAGGUACCcccGGGg -3'
miRNA:   3'- -CGUGGUG-----GGUaGCGGc--UCUAUGG---UCC- -5'
21553 5' -55.1 NC_004812.1 + 114879 0.66 0.954153
Target:  5'- cGCACC-CCCGUcaccaccaCGCCGGGGcuggUGCgCAGc -3'
miRNA:   3'- -CGUGGuGGGUA--------GCGGCUCU----AUG-GUCc -5'
21553 5' -55.1 NC_004812.1 + 101852 0.66 0.954153
Target:  5'- -aGCCGCCCGcgCGCCGcggGGAUGCg--- -3'
miRNA:   3'- cgUGGUGGGUa-GCGGC---UCUAUGgucc -5'
21553 5' -55.1 NC_004812.1 + 19372 0.66 0.954153
Target:  5'- aGC-CCGCCCAccgCGCgGAcGUccagcaggGCCAGGa -3'
miRNA:   3'- -CGuGGUGGGUa--GCGgCUcUA--------UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 27359 0.66 0.954153
Target:  5'- cGCGCgGCCCAgccaggUgGCCGAuGUACCgccccAGGu -3'
miRNA:   3'- -CGUGgUGGGU------AgCGGCUcUAUGG-----UCC- -5'
21553 5' -55.1 NC_004812.1 + 84309 0.66 0.954153
Target:  5'- -gACCucggGCCgCGUCGCCGGGGagcgccCCGGGc -3'
miRNA:   3'- cgUGG----UGG-GUAGCGGCUCUau----GGUCC- -5'
21553 5' -55.1 NC_004812.1 + 120351 0.66 0.954153
Target:  5'- uCGCCGCCCcugcaaccCGCgGGGGcgcgcgGCCGGGg -3'
miRNA:   3'- cGUGGUGGGua------GCGgCUCUa-----UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 79612 0.66 0.954153
Target:  5'- gGCGCgCGCgCG-CGCCGAGGcgGCCAa- -3'
miRNA:   3'- -CGUG-GUGgGUaGCGGCUCUa-UGGUcc -5'
21553 5' -55.1 NC_004812.1 + 143621 0.66 0.954153
Target:  5'- aGCGCCGCCCGUCacagaCCauGGUGCCGu- -3'
miRNA:   3'- -CGUGGUGGGUAGc----GGcuCUAUGGUcc -5'
21553 5' -55.1 NC_004812.1 + 58406 0.66 0.952572
Target:  5'- cCGCCGCCUGgaggcugggggggCGgCGGGAcccgGCCAGGa -3'
miRNA:   3'- cGUGGUGGGUa------------GCgGCUCUa---UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 139298 0.66 0.950134
Target:  5'- cCACCACCCc-CGCCaacGGGAcgGCCGGc -3'
miRNA:   3'- cGUGGUGGGuaGCGG---CUCUa-UGGUCc -5'
21553 5' -55.1 NC_004812.1 + 94255 0.66 0.950134
Target:  5'- cGCGCCgACCCAcgCGCCGcGGgcgcgcGCCGcGGc -3'
miRNA:   3'- -CGUGG-UGGGUa-GCGGCuCUa-----UGGU-CC- -5'
21553 5' -55.1 NC_004812.1 + 54774 0.66 0.950134
Target:  5'- gGCGgCGCUCGUgGCCGAccUAgCGGGg -3'
miRNA:   3'- -CGUgGUGGGUAgCGGCUcuAUgGUCC- -5'
21553 5' -55.1 NC_004812.1 + 9287 0.66 0.950134
Target:  5'- cCACUGCCCAg-GCCuGGAUACCGu- -3'
miRNA:   3'- cGUGGUGGGUagCGGcUCUAUGGUcc -5'
21553 5' -55.1 NC_004812.1 + 86274 0.66 0.950134
Target:  5'- aGCACC-CCCGacUCGCCGAccccUGCCccGGc -3'
miRNA:   3'- -CGUGGuGGGU--AGCGGCUcu--AUGGu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.