miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21553 5' -55.1 NC_004812.1 + 30841 0.72 0.709147
Target:  5'- gGCGCCGCCCGggggcgCGCCcggccauGGGggGCCgAGGg -3'
miRNA:   3'- -CGUGGUGGGUa-----GCGG-------CUCuaUGG-UCC- -5'
21553 5' -55.1 NC_004812.1 + 88554 0.73 0.629438
Target:  5'- -aACCGCCaCAUCGCCGAGGUgauGCUgcuGGc -3'
miRNA:   3'- cgUGGUGG-GUAGCGGCUCUA---UGGu--CC- -5'
21553 5' -55.1 NC_004812.1 + 76140 0.73 0.629438
Target:  5'- cGCGCCGCCgCGUCGCCGcGAccaccuUGCCcagcuccugcAGGg -3'
miRNA:   3'- -CGUGGUGG-GUAGCGGCuCU------AUGG----------UCC- -5'
21553 5' -55.1 NC_004812.1 + 44653 0.73 0.639603
Target:  5'- aGCGCC-UCUAUCGCCGAaacGUugCGGGg -3'
miRNA:   3'- -CGUGGuGGGUAGCGGCUc--UAugGUCC- -5'
21553 5' -55.1 NC_004812.1 + 74563 0.72 0.659909
Target:  5'- cGCGCCACCaCGuccUCGCgGAGGcggGCCAGc -3'
miRNA:   3'- -CGUGGUGG-GU---AGCGgCUCUa--UGGUCc -5'
21553 5' -55.1 NC_004812.1 + 78195 0.72 0.671044
Target:  5'- uGCGCCGCCaCGUCGgCGAGGgucaugcgcgucgacGCCAGa -3'
miRNA:   3'- -CGUGGUGG-GUAGCgGCUCUa--------------UGGUCc -5'
21553 5' -55.1 NC_004812.1 + 155904 0.72 0.680127
Target:  5'- cCGgCGCCCGggcugccgCGCCGAGGagGCCGGGc -3'
miRNA:   3'- cGUgGUGGGUa-------GCGGCUCUa-UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 82543 0.72 0.689178
Target:  5'- gGCGCCGCCCGUgGCCaGGAaGCCcuccagcgccgacAGGu -3'
miRNA:   3'- -CGUGGUGGGUAgCGGcUCUaUGG-------------UCC- -5'
21553 5' -55.1 NC_004812.1 + 97843 0.72 0.700189
Target:  5'- cGCGCC-CUCGcUCGCCGGGcgccgccgGCCGGGu -3'
miRNA:   3'- -CGUGGuGGGU-AGCGGCUCua------UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 27322 0.74 0.578789
Target:  5'- cGgGCC-CCgAUgGCCGGGAUcACCAGGg -3'
miRNA:   3'- -CgUGGuGGgUAgCGGCUCUA-UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 124505 0.74 0.568744
Target:  5'- gGCGCCGCCCccgGCCGAGcuacauAUACCGGa -3'
miRNA:   3'- -CGUGGUGGGuagCGGCUC------UAUGGUCc -5'
21553 5' -55.1 NC_004812.1 + 74887 0.74 0.558744
Target:  5'- gGCGCCGCgUcUCGCCGAGcgcguCCAGGc -3'
miRNA:   3'- -CGUGGUGgGuAGCGGCUCuau--GGUCC- -5'
21553 5' -55.1 NC_004812.1 + 51577 0.76 0.453204
Target:  5'- gGCGCCuCCCAUCGCgGAG--GCCGGa -3'
miRNA:   3'- -CGUGGuGGGUAGCGgCUCuaUGGUCc -5'
21553 5' -55.1 NC_004812.1 + 153421 0.76 0.453204
Target:  5'- uGCGCCGCgCCGcCGCCuGGAUgcGCCAGGu -3'
miRNA:   3'- -CGUGGUG-GGUaGCGGcUCUA--UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 42001 0.76 0.462375
Target:  5'- cGCGCgC-CCCAUCGCCGGgucGAUGgCGGGg -3'
miRNA:   3'- -CGUG-GuGGGUAGCGGCU---CUAUgGUCC- -5'
21553 5' -55.1 NC_004812.1 + 76384 0.76 0.489506
Target:  5'- gGCGCCgaggcgcgcgaugGCCCGgcgggCGCCGAGGgccaGCCGGGu -3'
miRNA:   3'- -CGUGG-------------UGGGUa----GCGGCUCUa---UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 83788 0.75 0.519302
Target:  5'- uGCAgCgGCCCGUCGgUGGGGUgACCGGGg -3'
miRNA:   3'- -CGU-GgUGGGUAGCgGCUCUA-UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 23852 0.75 0.528088
Target:  5'- gGCGCCGCCC-UCGagccgaucuacuCCGAGGUcaaguacGCCGGGg -3'
miRNA:   3'- -CGUGGUGGGuAGC------------GGCUCUA-------UGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 58380 0.75 0.5389
Target:  5'- cGCGCCGCCC--CGCgGAGA--CCAGGc -3'
miRNA:   3'- -CGUGGUGGGuaGCGgCUCUauGGUCC- -5'
21553 5' -55.1 NC_004812.1 + 28716 0.74 0.558744
Target:  5'- cCGCCGCCCcgCGCCGAc--ACCAGa -3'
miRNA:   3'- cGUGGUGGGuaGCGGCUcuaUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.