miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21555 5' -60.2 NC_004812.1 + 118455 0.66 0.76589
Target:  5'- -cUCCCCgucuUUCC-CUCUUUUUCCCCu -3'
miRNA:   3'- ccAGGGGa---AAGGcGGGAGAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 149356 0.66 0.765889
Target:  5'- -cUCCCCgucuUUCC-CUCUUUUUCCCCu -3'
miRNA:   3'- ccAGGGGa---AAGGcGGGAGAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 75978 0.66 0.765889
Target:  5'- cGGaCUCC---CCGCCC-CUCUCCaCCGc -3'
miRNA:   3'- -CCaGGGGaaaGGCGGGaGAGAGG-GGC- -5'
21555 5' -60.2 NC_004812.1 + 147731 0.66 0.765889
Target:  5'- -aUCCCUccUCCGCCUccuccCUUUCCCCc -3'
miRNA:   3'- ccAGGGGaaAGGCGGGa----GAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 141785 0.66 0.756757
Target:  5'- aGGgCCCCUgucgguacacgcUUCCGCUgcgcaUC-CUCCCCGc -3'
miRNA:   3'- -CCaGGGGA------------AAGGCGGg----AGaGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 74239 0.66 0.756757
Target:  5'- gGGUCUCCg--CgCGCCCgcagguacgcCUCgCCCCGg -3'
miRNA:   3'- -CCAGGGGaaaG-GCGGGa---------GAGaGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 11565 0.66 0.756757
Target:  5'- aGGUCCgCCg--CCGCCCccgC-CUCCgCGc -3'
miRNA:   3'- -CCAGG-GGaaaGGCGGGa--GaGAGGgGC- -5'
21555 5' -60.2 NC_004812.1 + 131033 0.66 0.747522
Target:  5'- cGUCCCCg--CCGUCC----UCCCCGu -3'
miRNA:   3'- cCAGGGGaaaGGCGGGagagAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 139757 0.66 0.747522
Target:  5'- cGGUCCCggggcCCGCCCggaCUCccaCCCCu -3'
miRNA:   3'- -CCAGGGgaaa-GGCGGGa--GAGa--GGGGc -5'
21555 5' -60.2 NC_004812.1 + 147368 0.66 0.747522
Target:  5'- cGUCgCCCU-UCCGCgagCUCUCCCgGg -3'
miRNA:   3'- cCAG-GGGAaAGGCGggaGAGAGGGgC- -5'
21555 5' -60.2 NC_004812.1 + 8093 0.66 0.747522
Target:  5'- cGG-CCCgCg--CCGCCCcccCUC-CCCCGg -3'
miRNA:   3'- -CCaGGG-GaaaGGCGGGa--GAGaGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 96901 0.66 0.747522
Target:  5'- gGGcCCgCCUcgCCGCUCgccgccgCUCUCCCUc -3'
miRNA:   3'- -CCaGG-GGAaaGGCGGGa------GAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 38994 0.66 0.747522
Target:  5'- cGG-CCCgCg--CCGCCCcccCUC-CCCCGg -3'
miRNA:   3'- -CCaGGG-GaaaGGCGGGa--GAGaGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 75021 0.66 0.747522
Target:  5'- uGGUCCagCUcggCCGCCUUCUCggucugCUCCa -3'
miRNA:   3'- -CCAGGg-GAaa-GGCGGGAGAGa-----GGGGc -5'
21555 5' -60.2 NC_004812.1 + 99041 0.66 0.747522
Target:  5'- --gCCCCgucUCgGCUCUCUuccucgcggccaCUCCCCGg -3'
miRNA:   3'- ccaGGGGaa-AGgCGGGAGA------------GAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 5525 0.66 0.747522
Target:  5'- cGUCCCCg--CCGUCC----UCCCCGu -3'
miRNA:   3'- cCAGGGGaaaGGCGGGagagAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 3181 0.66 0.746594
Target:  5'- cGcCCCCgacucaCCGCCggcuucuCUCUCUCUCCGc -3'
miRNA:   3'- cCaGGGGaaa---GGCGG-------GAGAGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 34082 0.66 0.746593
Target:  5'- cGcCCCCgacucaCCGCCggcuucuCUCUCUCUCCGc -3'
miRNA:   3'- cCaGGGGaaa---GGCGG-------GAGAGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 150568 0.66 0.739131
Target:  5'- -uUCCCCUcgCCGCCCUacggcgcgcagucgCUgCCCGc -3'
miRNA:   3'- ccAGGGGAaaGGCGGGAga------------GAgGGGC- -5'
21555 5' -60.2 NC_004812.1 + 119667 0.66 0.739131
Target:  5'- -uUCCCCUcgCCGCCCUacggcgcgcagucgCUgCCCGc -3'
miRNA:   3'- ccAGGGGAaaGGCGGGAga------------GAgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.