miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21555 5' -60.2 NC_004812.1 + 7393 0.71 0.497068
Target:  5'- --cCCCCUccgCCGCUCUCUCacggacUCCCCu -3'
miRNA:   3'- ccaGGGGAaa-GGCGGGAGAG------AGGGGc -5'
21555 5' -60.2 NC_004812.1 + 118262 0.72 0.434526
Target:  5'- -uUCCCC---CCGCCCuUCUCUCCCa- -3'
miRNA:   3'- ccAGGGGaaaGGCGGG-AGAGAGGGgc -5'
21555 5' -60.2 NC_004812.1 + 7120 0.71 0.451942
Target:  5'- cGGaCCCCca-CCGCCC-CUCUCaCCCa -3'
miRNA:   3'- -CCaGGGGaaaGGCGGGaGAGAG-GGGc -5'
21555 5' -60.2 NC_004812.1 + 45963 0.71 0.460792
Target:  5'- --aCCCCUccCCGCCCgcgUCUCcgCCCCGc -3'
miRNA:   3'- ccaGGGGAaaGGCGGG---AGAGa-GGGGC- -5'
21555 5' -60.2 NC_004812.1 + 26435 0.71 0.460792
Target:  5'- -aUCCCCgUUCuCGUCCUCg-UCCCCGa -3'
miRNA:   3'- ccAGGGGaAAG-GCGGGAGagAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 132373 0.71 0.469732
Target:  5'- -uUCCCCUUcCCGCaCUgUUUCCCCGc -3'
miRNA:   3'- ccAGGGGAAaGGCGgGAgAGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 125742 0.71 0.469732
Target:  5'- cGG-CCCCgcggccCCGCUCUC-CUCCCCc -3'
miRNA:   3'- -CCaGGGGaaa---GGCGGGAGaGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 126017 0.71 0.478761
Target:  5'- cGGcCCCCgguccCCGCUgUCUCccgCCCCGg -3'
miRNA:   3'- -CCaGGGGaaa--GGCGGgAGAGa--GGGGC- -5'
21555 5' -60.2 NC_004812.1 + 125802 0.71 0.487874
Target:  5'- cGGcCCCCUcccgucccCCGCCCUCccucggucuccgUCUCCUCGu -3'
miRNA:   3'- -CCaGGGGAaa------GGCGGGAG------------AGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 55755 0.72 0.425965
Target:  5'- -cUCCCCcgcggccCCGUCCUCgccCUCCCCGg -3'
miRNA:   3'- ccAGGGGaaa----GGCGGGAGa--GAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 127343 0.73 0.384716
Target:  5'- -cUCCCCccUCCuCCC-CUCUCCCCGc -3'
miRNA:   3'- ccAGGGGaaAGGcGGGaGAGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 7194 0.74 0.331585
Target:  5'- cGcCCCCUUUCUuCCCUC-CUCCCCc -3'
miRNA:   3'- cCaGGGGAAAGGcGGGAGaGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 33065 0.79 0.165374
Target:  5'- cGG-CCCCgccuccgccCCGCCCUCUCcUCCCCGc -3'
miRNA:   3'- -CCaGGGGaaa------GGCGGGAGAG-AGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 125878 0.77 0.205384
Target:  5'- cGUCCCCcucCCGCCCcgcucuccgUCUCUCCCCc -3'
miRNA:   3'- cCAGGGGaaaGGCGGG---------AGAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 2420 0.74 0.310525
Target:  5'- cGUCCCCc--CCGCCCcccugcgguuUCUCaUCCCCGa -3'
miRNA:   3'- cCAGGGGaaaGGCGGG----------AGAG-AGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 92314 0.74 0.31743
Target:  5'- cGGUCgCCCcg-CCGCCCgcucgcgCgUCUCCCCGc -3'
miRNA:   3'- -CCAG-GGGaaaGGCGGGa------G-AGAGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 146099 0.74 0.31743
Target:  5'- cGcCCCCgccUCCGgCUUCUCUCCCCu -3'
miRNA:   3'- cCaGGGGaa-AGGCgGGAGAGAGGGGc -5'
21555 5' -60.2 NC_004812.1 + 1449 0.74 0.323037
Target:  5'- cGGUCCCCgcccccacgaCCGCCCUCgacccggCcCCCCGc -3'
miRNA:   3'- -CCAGGGGaaa-------GGCGGGAGa------GaGGGGC- -5'
21555 5' -60.2 NC_004812.1 + 120275 0.74 0.323743
Target:  5'- aGUCCUC-UUCCGCCC-CUCUggggggcCCCCGg -3'
miRNA:   3'- cCAGGGGaAAGGCGGGaGAGA-------GGGGC- -5'
21555 5' -60.2 NC_004812.1 + 69809 0.74 0.331585
Target:  5'- cGUCgCCg--CCGCCCUCcuccUCUCCCCc -3'
miRNA:   3'- cCAGgGGaaaGGCGGGAG----AGAGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.