miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21556 3' -53.9 NC_004812.1 + 43697 0.69 0.889324
Target:  5'- uGGGUcggGCC-GGCGCAgGUCUgg-GCGg -3'
miRNA:   3'- -CCCA---UGGaCCGCGUgCAGAagaUGCg -5'
21556 3' -53.9 NC_004812.1 + 122842 0.69 0.867936
Target:  5'- cGGUGCC-GGCGCgcacgGCGUCcUCgGCGUc -3'
miRNA:   3'- cCCAUGGaCCGCG-----UGCAGaAGaUGCG- -5'
21556 3' -53.9 NC_004812.1 + 18747 0.69 0.875286
Target:  5'- gGGGUACUcgcGGCGCAccuCGUCcgUCgccaGCGCc -3'
miRNA:   3'- -CCCAUGGa--CCGCGU---GCAGa-AGa---UGCG- -5'
21556 3' -53.9 NC_004812.1 + 95054 0.69 0.875286
Target:  5'- gGGGU-CCcGGCGCgaGCGg---CUACGCg -3'
miRNA:   3'- -CCCAuGGaCCGCG--UGCagaaGAUGCG- -5'
21556 3' -53.9 NC_004812.1 + 35142 0.69 0.882416
Target:  5'- aGGGacuCCaGGCGCACGUCcgUCgagGgGCc -3'
miRNA:   3'- -CCCau-GGaCCGCGUGCAGa-AGa--UgCG- -5'
21556 3' -53.9 NC_004812.1 + 103386 0.69 0.889324
Target:  5'- aGGU-CCUGGCGCAUGacCUgCUcCGCg -3'
miRNA:   3'- cCCAuGGACCGCGUGCa-GAaGAuGCG- -5'
21556 3' -53.9 NC_004812.1 + 128682 0.69 0.889324
Target:  5'- gGGGUcggcgACCUGGCGCAUccaggCggCgGCGCg -3'
miRNA:   3'- -CCCA-----UGGACCGCGUGca---GaaGaUGCG- -5'
21556 3' -53.9 NC_004812.1 + 16127 0.69 0.889324
Target:  5'- cGG-ACCUGGCG-ACG-CagCUGCGCg -3'
miRNA:   3'- cCCaUGGACCGCgUGCaGaaGAUGCG- -5'
21556 3' -53.9 NC_004812.1 + 31668 0.69 0.889324
Target:  5'- cGGGgacaGCCgcugggGGCGCAgcuCGUCcUCgccgGCGCa -3'
miRNA:   3'- -CCCa---UGGa-----CCGCGU---GCAGaAGa---UGCG- -5'
21556 3' -53.9 NC_004812.1 + 33012 0.69 0.867936
Target:  5'- cGGGcgACCgGGCGCGCGUgUgcUCggcCGCc -3'
miRNA:   3'- -CCCa-UGGaCCGCGUGCAgA--AGau-GCG- -5'
21556 3' -53.9 NC_004812.1 + 155481 0.7 0.860374
Target:  5'- gGGGaGCCUGGCGgC-CGgCUUCUGCc- -3'
miRNA:   3'- -CCCaUGGACCGC-GuGCaGAAGAUGcg -5'
21556 3' -53.9 NC_004812.1 + 66791 0.7 0.860374
Target:  5'- uGGGUcggggcagaaauACCUGGU--ACGUCUUgaACGCg -3'
miRNA:   3'- -CCCA------------UGGACCGcgUGCAGAAgaUGCG- -5'
21556 3' -53.9 NC_004812.1 + 15440 0.79 0.361723
Target:  5'- cGGG-AgCUGGCGCGCGcCUUCgacucgGCGCg -3'
miRNA:   3'- -CCCaUgGACCGCGUGCaGAAGa-----UGCG- -5'
21556 3' -53.9 NC_004812.1 + 94124 0.78 0.420611
Target:  5'- cGGG-GCCUcGCGCACGUCUgg-ACGCa -3'
miRNA:   3'- -CCCaUGGAcCGCGUGCAGAagaUGCG- -5'
21556 3' -53.9 NC_004812.1 + 126743 0.74 0.614568
Target:  5'- gGGGU-CCUGGCGgACGgCUugUCUGCGg -3'
miRNA:   3'- -CCCAuGGACCGCgUGCaGA--AGAUGCg -5'
21556 3' -53.9 NC_004812.1 + 23439 0.74 0.655586
Target:  5'- uGGuGUGCCUGGCGgcCGCGUUUgCcGCGCu -3'
miRNA:   3'- -CC-CAUGGACCGC--GUGCAGAaGaUGCG- -5'
21556 3' -53.9 NC_004812.1 + 152239 0.73 0.706365
Target:  5'- uGGG-GCCUGGCGCACGcCgcCgcCGCc -3'
miRNA:   3'- -CCCaUGGACCGCGUGCaGaaGauGCG- -5'
21556 3' -53.9 NC_004812.1 + 85714 0.72 0.736147
Target:  5'- gGGGgcgGCCcacUGGcCGCACGUgCgcCUACGCg -3'
miRNA:   3'- -CCCa--UGG---ACC-GCGUGCA-GaaGAUGCG- -5'
21556 3' -53.9 NC_004812.1 + 61187 0.71 0.77454
Target:  5'- uGGGUuCCaUGGCaGCGCGUCacUCgccggGCGCg -3'
miRNA:   3'- -CCCAuGG-ACCG-CGUGCAGa-AGa----UGCG- -5'
21556 3' -53.9 NC_004812.1 + 147504 0.71 0.793005
Target:  5'- gGGGUccggugGCCccgaGGCGC-CGUCUUC-GCGCc -3'
miRNA:   3'- -CCCA------UGGa---CCGCGuGCAGAAGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.