Results 1 - 20 of 523 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21556 | 5' | -62.7 | NC_004812.1 | + | 74061 | 0.66 | 0.620595 |
Target: 5'- gGGcGGCAGcGGCgGGCgCGCgCGGGC-Cg -3' miRNA: 3'- gCU-CCGUCuUCGgCCG-GCG-GUCCGaG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 77971 | 0.66 | 0.620595 |
Target: 5'- aGAGGguGuccgGGCCGGCCuuCgAGcGCUCc -3' miRNA: 3'- gCUCCguCu---UCGGCCGGc-GgUC-CGAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 32457 | 0.66 | 0.620595 |
Target: 5'- --cGGCAGAAguGCCGGCa--CAGGCg- -3' miRNA: 3'- gcuCCGUCUU--CGGCCGgcgGUCCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 100329 | 0.66 | 0.620595 |
Target: 5'- -cAGGCccucGAGCgGGCCGCCgcGGGCg- -3' miRNA: 3'- gcUCCGuc--UUCGgCCGGCGG--UCCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 69951 | 0.66 | 0.620595 |
Target: 5'- gGAGGCcgaggGGggGUCuGUgGCCggGGGCUCu -3' miRNA: 3'- gCUCCG-----UCuuCGGcCGgCGG--UCCGAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 3396 | 0.66 | 0.620595 |
Target: 5'- gCGGcGGCGGAGggcGCCGG-CGUguGGCUg -3' miRNA: 3'- -GCU-CCGUCUU---CGGCCgGCGguCCGAg -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 138770 | 0.66 | 0.620595 |
Target: 5'- uGuGGCGcucGAucCCGGCCGCCuGGgUCg -3' miRNA: 3'- gCuCCGU---CUucGGCCGGCGGuCCgAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 79455 | 0.66 | 0.620595 |
Target: 5'- cCGcGGGCGGGcuGCCGGCCGagaCGcGGCg- -3' miRNA: 3'- -GC-UCCGUCUu-CGGCCGGCg--GU-CCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 71393 | 0.66 | 0.620595 |
Target: 5'- gCGAGGCGGggGUcgcagCGGgCGCgGGGg-- -3' miRNA: 3'- -GCUCCGUCuuCG-----GCCgGCGgUCCgag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 108064 | 0.66 | 0.620595 |
Target: 5'- uGAGGgGGAAGUCGGCgGCgGuGCg- -3' miRNA: 3'- gCUCCgUCUUCGGCCGgCGgUcCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 124464 | 0.66 | 0.620595 |
Target: 5'- -cGGGCGGccGCgGcGCCGCCcGGGCg- -3' miRNA: 3'- gcUCCGUCuuCGgC-CGGCGG-UCCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 107599 | 0.66 | 0.620595 |
Target: 5'- uCGuccGCGuGGGcCCGGCCGCCGgGGUUCa -3' miRNA: 3'- -GCuc-CGUcUUC-GGCCGGCGGU-CCGAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 71117 | 0.66 | 0.620595 |
Target: 5'- --cGGuCGGAGGCgCGGgCGCCucggGGGUUCg -3' miRNA: 3'- gcuCC-GUCUUCG-GCCgGCGG----UCCGAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 128904 | 0.66 | 0.620595 |
Target: 5'- gCGGcGGCGGAGggcGCCGG-CGUguGGCUg -3' miRNA: 3'- -GCU-CCGUCUU---CGGCCgGCGguCCGAg -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 69424 | 0.66 | 0.620595 |
Target: 5'- -uGGGCccggAGGAcGCCGGCCGCaCGcGGCg- -3' miRNA: 3'- gcUCCG----UCUU-CGGCCGGCG-GU-CCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 48151 | 0.66 | 0.620595 |
Target: 5'- uCGAGGCGcGgcGCCgggcGGCgGCCGcGGCg- -3' miRNA: 3'- -GCUCCGU-CuuCGG----CCGgCGGU-CCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 155365 | 0.66 | 0.620595 |
Target: 5'- -cGGGCGGccGCgGcGCCGCCcGGGCg- -3' miRNA: 3'- gcUCCGUCuuCGgC-CGGCGG-UCCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 125316 | 0.66 | 0.620595 |
Target: 5'- gCGAGcGCguguuccgaGGgcGCCGguucguGCCGCCGGGCg- -3' miRNA: 3'- -GCUC-CG---------UCuuCGGC------CGGCGGUCCGag -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 94123 | 0.66 | 0.619608 |
Target: 5'- gCGGGGCcucgcgcacgucuGGAcGCaGGCCGCCgcgcugGGGUUCg -3' miRNA: 3'- -GCUCCG-------------UCUuCGgCCGGCGG------UCCGAG- -5' |
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21556 | 5' | -62.7 | NC_004812.1 | + | 107851 | 0.66 | 0.617637 |
Target: 5'- gGAGGCGGGgcuccgccuccgagGGCgGaGCCGCCAcGCg- -3' miRNA: 3'- gCUCCGUCU--------------UCGgC-CGGCGGUcCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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