miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 3' -54.5 NC_004812.1 + 42001 0.66 0.939553
Target:  5'- -cGCGcGCcCCAUCgCCG-GGUCGAUGg -3'
miRNA:   3'- caUGU-CGuGGUAGgGGCaCCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 26907 0.66 0.939553
Target:  5'- -cGCGGUccccGCCGUUCCCGccgGGUaCGGCGc -3'
miRNA:   3'- caUGUCG----UGGUAGGGGCa--CCA-GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 4734 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 21731 0.66 0.934674
Target:  5'- -cGCGGUACUcgCCCCacGUGGU-GACGu -3'
miRNA:   3'- caUGUCGUGGuaGGGG--CACCAgUUGC- -5'
21558 3' -54.5 NC_004812.1 + 144866 0.66 0.934674
Target:  5'- gGUGCGGUucgaCGUCCCCGaGGagugCGGCGa -3'
miRNA:   3'- -CAUGUCGug--GUAGGGGCaCCa---GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 151188 0.66 0.934674
Target:  5'- ---gGGCGCUGUCCCCGccGUCGuccGCGg -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 130242 0.66 0.934674
Target:  5'- cGUAgAGCACgCG-CCCCGgGGgCGGCGg -3'
miRNA:   3'- -CAUgUCGUG-GUaGGGGCaCCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 119951 0.66 0.934674
Target:  5'- cUGCuGaCGCUGUCCCUGUGGgccugggCGGCGc -3'
miRNA:   3'- cAUGuC-GUGGUAGGGGCACCa------GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 25680 0.66 0.934674
Target:  5'- ---gGGCGCUGUCCCCGccGUCGuccGCGg -3'
miRNA:   3'- caugUCGUGGUAGGGGCacCAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 150852 0.66 0.934674
Target:  5'- cUGCuGaCGCUGUCCCUGUGGgccugggCGGCGc -3'
miRNA:   3'- cAUGuC-GUGGUAGGGGCACCa------GUUGC- -5'
21558 3' -54.5 NC_004812.1 + 98597 0.67 0.931631
Target:  5'- -cGCGGCAUCAUCgCCGagggcggggcgucggUGGcCAGCGc -3'
miRNA:   3'- caUGUCGUGGUAGgGGC---------------ACCaGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 68131 0.67 0.931631
Target:  5'- -cGCGGCGacgaagggcCCGgugucggggaguggcUCCCCGgcagGGUCGGCGg -3'
miRNA:   3'- caUGUCGU---------GGU---------------AGGGGCa---CCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 127693 0.67 0.929554
Target:  5'- -gGCGGCGgCGUCgUCGUcGUCGGCGa -3'
miRNA:   3'- caUGUCGUgGUAGgGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 27470 0.67 0.929554
Target:  5'- cGUuCAGCGCCG-CCCCGgcgcGGagGGCGc -3'
miRNA:   3'- -CAuGUCGUGGUaGGGGCa---CCagUUGC- -5'
21558 3' -54.5 NC_004812.1 + 128947 0.67 0.929554
Target:  5'- -cGCGGCGCCAgCCgCCGcgggGGUCGggcccgGCGg -3'
miRNA:   3'- caUGUCGUGGUaGG-GGCa---CCAGU------UGC- -5'
21558 3' -54.5 NC_004812.1 + 142533 0.67 0.929554
Target:  5'- -cGCAGCAaCAUCgUCGUGaUCGACGa -3'
miRNA:   3'- caUGUCGUgGUAGgGGCACcAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 3439 0.67 0.929554
Target:  5'- -cGCGGCGCCAgCCgCCGcgggGGUCGggcccgGCGg -3'
miRNA:   3'- caUGUCGUGGUaGG-GGCa---CCAGU------UGC- -5'
21558 3' -54.5 NC_004812.1 + 17189 0.67 0.929554
Target:  5'- --cCAGCACCGgccgCCCCG-GuGUCGuucGCGg -3'
miRNA:   3'- cauGUCGUGGUa---GGGGCaC-CAGU---UGC- -5'
21558 3' -54.5 NC_004812.1 + 2184 0.67 0.929554
Target:  5'- -gGCGGCGgCGUCgUCGUcGUCGGCGa -3'
miRNA:   3'- caUGUCGUgGUAGgGGCAcCAGUUGC- -5'
21558 3' -54.5 NC_004812.1 + 130455 0.67 0.926364
Target:  5'- -gACGGCaacgacacagacucgACCGUCgagCCCGggUGGUCGGCGg -3'
miRNA:   3'- caUGUCG---------------UGGUAG---GGGC--ACCAGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.