miRNA display CGI


Results 21 - 40 of 804 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21558 5' -63.5 NC_004812.1 + 149615 0.66 0.635601
Target:  5'- cCGCGGCgauguucguGCGACGCgaUGGGGGCGgggGUGg -3'
miRNA:   3'- -GCGCCG---------CGCUGCG--GCUCCUGCgg-CAC- -5'
21558 5' -63.5 NC_004812.1 + 25398 0.66 0.635601
Target:  5'- gGuCGGCGCGcuCGCCGGaGAcCGCCGc- -3'
miRNA:   3'- gC-GCCGCGCu-GCGGCUcCU-GCGGCac -5'
21558 5' -63.5 NC_004812.1 + 83543 0.66 0.635601
Target:  5'- cCGCGaggaGCGCGGuCuCCG-GGAgGCCGUGc -3'
miRNA:   3'- -GCGC----CGCGCU-GcGGCuCCUgCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 14098 0.66 0.635601
Target:  5'- uGCGG-GUGaACGCgGGGaGcGCGCCGUGc -3'
miRNA:   3'- gCGCCgCGC-UGCGgCUC-C-UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 113240 0.66 0.635601
Target:  5'- gCGCGGcCGCGgaGCGCgucagCGAGaGcuucgcccgcaGCGCCGUGg -3'
miRNA:   3'- -GCGCC-GCGC--UGCG-----GCUC-C-----------UGCGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 119397 0.66 0.635601
Target:  5'- cCGgGGCcccccGCG-UGcCCGGGGGCGCCGc- -3'
miRNA:   3'- -GCgCCG-----CGCuGC-GGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 24106 0.66 0.635601
Target:  5'- cCGCGGCgauguucguGCGACGCgaUGGGGGCGgggGUGg -3'
miRNA:   3'- -GCGCCG---------CGCUGCG--GCUCCUGCgg-CAC- -5'
21558 5' -63.5 NC_004812.1 + 150298 0.66 0.635601
Target:  5'- cCGgGGCcccccGCG-UGcCCGGGGGCGCCGc- -3'
miRNA:   3'- -GCgCCG-----CGCuGC-GGCUCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 102954 0.66 0.635601
Target:  5'- gGCGGgGgGGCGUCGGGGuCGUagucgGUGu -3'
miRNA:   3'- gCGCCgCgCUGCGGCUCCuGCGg----CAC- -5'
21558 5' -63.5 NC_004812.1 + 19525 0.66 0.634641
Target:  5'- gCGCGaaccGCGCGGCGCCGGugucgaugcGGACcgucagcgacgcgGCCGa- -3'
miRNA:   3'- -GCGC----CGCGCUGCGGCU---------CCUG-------------CGGCac -5'
21558 5' -63.5 NC_004812.1 + 54511 0.66 0.634641
Target:  5'- aGCGuCGCGugGCCGGccucgacGGACGCguugGUGc -3'
miRNA:   3'- gCGCcGCGCugCGGCU-------CCUGCGg---CAC- -5'
21558 5' -63.5 NC_004812.1 + 134103 0.66 0.63272
Target:  5'- uCGCGGUGCGugacggugguccgcGCGCCGAuGGgGUCGg- -3'
miRNA:   3'- -GCGCCGCGC--------------UGCGGCUcCUgCGGCac -5'
21558 5' -63.5 NC_004812.1 + 136771 0.66 0.629839
Target:  5'- uGUGGCGCG-CGCUGuacgcgugcgcgcuGGugGCCcUGg -3'
miRNA:   3'- gCGCCGCGCuGCGGCu-------------CCugCGGcAC- -5'
21558 5' -63.5 NC_004812.1 + 42915 0.66 0.629839
Target:  5'- gGCGGCGCcgGGCGCagagcucgucgagcgCGAGcACGCCGc- -3'
miRNA:   3'- gCGCCGCG--CUGCG---------------GCUCcUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 32591 0.66 0.629839
Target:  5'- gGCGGcCGUcguguacgggucguaGGCGCCGcGGGCGUCGc- -3'
miRNA:   3'- gCGCC-GCG---------------CUGCGGCuCCUGCGGCac -5'
21558 5' -63.5 NC_004812.1 + 27357 0.66 0.625998
Target:  5'- gGC-GCGCGGCccaGCC-AGGugGCCGa- -3'
miRNA:   3'- gCGcCGCGCUG---CGGcUCCugCGGCac -5'
21558 5' -63.5 NC_004812.1 + 7977 0.66 0.625998
Target:  5'- aCGCggaGGCGCGcggGCGCCGgucaggGGGGCGCUc-- -3'
miRNA:   3'- -GCG---CCGCGC---UGCGGC------UCCUGCGGcac -5'
21558 5' -63.5 NC_004812.1 + 123573 0.66 0.625998
Target:  5'- gGCGGCGCGGCcggGCuCGAGu-CGuCCGUc -3'
miRNA:   3'- gCGCCGCGCUG---CG-GCUCcuGC-GGCAc -5'
21558 5' -63.5 NC_004812.1 + 17145 0.66 0.625998
Target:  5'- cCGCGGU-CGG-GCCGGGGGgaGUCGUGg -3'
miRNA:   3'- -GCGCCGcGCUgCGGCUCCUg-CGGCAC- -5'
21558 5' -63.5 NC_004812.1 + 89129 0.66 0.625998
Target:  5'- cCGCgGGCGCcagcccgcgGACGCgUGGGGAcaCGCCGa- -3'
miRNA:   3'- -GCG-CCGCG---------CUGCG-GCUCCU--GCGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.