miRNA display CGI


Results 21 - 40 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 146499 0.67 0.754118
Target:  5'- --cUUUUCCCuUCCUCaCCUCUCaCCCcCa -3'
miRNA:   3'- gaaAGAAGGG-AGGAG-GGGGAG-GGGaG- -5'
21559 3' -58.7 NC_004812.1 + 69810 0.67 0.744628
Target:  5'- --gUCgccgccgCCCUCCUCCUCUcCCCC-Cg -3'
miRNA:   3'- gaaAGaa-----GGGAGGAGGGGGaGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 154556 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 84466 0.67 0.715623
Target:  5'- ------gCCCgCCUCCCCCggCCCCg- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGa-GGGGag -5'
21559 3' -58.7 NC_004812.1 + 40371 0.67 0.735043
Target:  5'- uUUUCUguUCCCcCCcCCCCCcCCCCc- -3'
miRNA:   3'- gAAAGA--AGGGaGGaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 38993 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 29047 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 118208 0.67 0.725372
Target:  5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3'
miRNA:   3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 131266 0.67 0.744628
Target:  5'- -------gCCUCCggCCCCUCUCCUCu -3'
miRNA:   3'- gaaagaagGGAGGagGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 8092 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 149109 0.67 0.725372
Target:  5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3'
miRNA:   3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 118770 0.67 0.715623
Target:  5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3'
miRNA:   3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5'
21559 3' -58.7 NC_004812.1 + 33057 0.67 0.715623
Target:  5'- cCUUUUgacggCCCcgCCUCCgccccgCCCUCUCCUCc -3'
miRNA:   3'- -GAAAGaa---GGGa-GGAGG------GGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 29656 0.67 0.735043
Target:  5'- ---cCUUCUCUCCcCCgCCCaUCCCCg- -3'
miRNA:   3'- gaaaGAAGGGAGGaGG-GGG-AGGGGag -5'
21559 3' -58.7 NC_004812.1 + 146092 0.67 0.754118
Target:  5'- aCUUUCccgCCCccgCCUCCggcuuCUCUCCCCUa -3'
miRNA:   3'- -GAAAGaa-GGGa--GGAGG-----GGGAGGGGAg -5'
21559 3' -58.7 NC_004812.1 + 102986 0.68 0.695926
Target:  5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3'
miRNA:   3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 4125 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 35026 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 146944 0.68 0.655981
Target:  5'- -----gUUCCgggCCgUCCCCCUCCCCg- -3'
miRNA:   3'- gaaagaAGGGa--GG-AGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 34101 0.68 0.695926
Target:  5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3'
miRNA:   3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.