Results 41 - 60 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 147979 | 0.68 | 0.655981 |
Target: 5'- ------gCCCg-CUCCCCCgCCCCUCg -3' miRNA: 3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 126414 | 0.68 | 0.705804 |
Target: 5'- ------aCCCcCCUCCCCCaCgCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGaG-GGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 906 | 0.68 | 0.705804 |
Target: 5'- ------aCCCcCCUCCCCCaCgCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGaG-GGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 117078 | 0.68 | 0.655981 |
Target: 5'- ------gCCCg-CUCCCCCgCCCCUCg -3' miRNA: 3'- gaaagaaGGGagGAGGGGGaGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 140540 | 0.68 | 0.666015 |
Target: 5'- gUUUCcUCCCguggaCUUCgCCCUCCCCg- -3' miRNA: 3'- gAAAGaAGGGa----GGAGgGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7001 | 0.68 | 0.695926 |
Target: 5'- ------gUgUUUCUCCUCCUCCCCUCg -3' miRNA: 3'- gaaagaaGgGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 34101 | 0.68 | 0.695926 |
Target: 5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3' miRNA: 3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 104336 | 0.68 | 0.685996 |
Target: 5'- -cUUCUccgCCCaUCC-CCCgCCUCCCCg- -3' miRNA: 3'- gaAAGAa--GGG-AGGaGGG-GGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 118161 | 0.68 | 0.676023 |
Target: 5'- --gUCUcCCCgCgCUCCCCCgUCCCCg- -3' miRNA: 3'- gaaAGAaGGGaG-GAGGGGG-AGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 4125 | 0.68 | 0.655981 |
Target: 5'- --aUCcUCCCUCggCCCCCgCCCCg- -3' miRNA: 3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 102986 | 0.68 | 0.695926 |
Target: 5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3' miRNA: 3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 3200 | 0.68 | 0.695926 |
Target: 5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3' miRNA: 3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 37903 | 0.68 | 0.695926 |
Target: 5'- ------gUgUUUCUCCUCCUCCCCUCg -3' miRNA: 3'- gaaagaaGgGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 146944 | 0.68 | 0.655981 |
Target: 5'- -----gUUCCgggCCgUCCCCCUCCCCg- -3' miRNA: 3'- gaaagaAGGGa--GG-AGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 119717 | 0.69 | 0.615736 |
Target: 5'- ------cCCCUCgUCCCCCcgaCCCUCg -3' miRNA: 3'- gaaagaaGGGAGgAGGGGGag-GGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 34054 | 0.69 | 0.625798 |
Target: 5'- ---gCUcCCCUCCgCCCCC-CCCCg- -3' miRNA: 3'- gaaaGAaGGGAGGaGGGGGaGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 149899 | 0.69 | 0.645928 |
Target: 5'- uCUUUCcuUUCuCCUUCUCUCCC-CCCCa- -3' miRNA: 3'- -GAAAG--AAG-GGAGGAGGGGGaGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6859 | 0.69 | 0.625798 |
Target: 5'- -------gCCUCCUUCCCCUUCCCg- -3' miRNA: 3'- gaaagaagGGAGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 150465 | 0.69 | 0.645928 |
Target: 5'- ------gCCC-CCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 119564 | 0.69 | 0.645928 |
Target: 5'- ------gCCC-CCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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