miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 131884 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 132144 0.78 0.210929
Target:  5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 149970 0.78 0.221375
Target:  5'- --aUC-UCCC-CCaCCCCCUCCCCUCu -3'
miRNA:   3'- gaaAGaAGGGaGGaGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 119069 0.78 0.221375
Target:  5'- --aUC-UCCC-CCaCCCCCUCCCCUCu -3'
miRNA:   3'- gaaAGaAGGGaGGaGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 115950 0.77 0.232258
Target:  5'- ---cCUcCCCUCCcccgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa------GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 115910 0.77 0.232258
Target:  5'- ---cCUcCCCUCCcccgcgcCCCCCUCCCCUCc -3'
miRNA:   3'- gaaaGAaGGGAGGa------GGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 1059 0.77 0.249424
Target:  5'- -----cUCCCcCCUCCCCCgCCCCUCc -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 126568 0.77 0.249424
Target:  5'- -----cUCCCcCCUCCCCCgCCCCUCc -3'
miRNA:   3'- gaaagaAGGGaGGAGGGGGaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 9888 0.76 0.286882
Target:  5'- -cUUCUUUCCUCCuuUCCCCCcCCCCcCg -3'
miRNA:   3'- gaAAGAAGGGAGG--AGGGGGaGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 6805 0.76 0.286882
Target:  5'- ---cCUUCCCUUCcCCCCUUCCCCg- -3'
miRNA:   3'- gaaaGAAGGGAGGaGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 56777 0.75 0.300317
Target:  5'- ------cCCCUCCUCCCCCcccUCCCCg- -3'
miRNA:   3'- gaaagaaGGGAGGAGGGGG---AGGGGag -5'
21559 3' -58.7 NC_004812.1 + 7975 0.75 0.307215
Target:  5'- ---cCUcgCCCUcCCUCCCCCgcgcaCCCCUCg -3'
miRNA:   3'- gaaaGAa-GGGA-GGAGGGGGa----GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 119650 0.75 0.314234
Target:  5'- ---cCUUCgCCUCCgCCgCCUUCCCCUCg -3'
miRNA:   3'- gaaaGAAG-GGAGGaGG-GGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 125843 0.75 0.314234
Target:  5'- --cUCguccCCCUCCcgUCCCCCUCCCgUCc -3'
miRNA:   3'- gaaAGaa--GGGAGG--AGGGGGAGGGgAG- -5'
21559 3' -58.7 NC_004812.1 + 335 0.75 0.314234
Target:  5'- --cUCguccCCCUCCcgUCCCCCUCCCgUCc -3'
miRNA:   3'- gaaAGaa--GGGAGG--AGGGGGAGGGgAG- -5'
21559 3' -58.7 NC_004812.1 + 150551 0.75 0.314234
Target:  5'- ---cCUUCgCCUCCgCCgCCUUCCCCUCg -3'
miRNA:   3'- gaaaGAAG-GGAGGaGG-GGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 154641 0.75 0.321373
Target:  5'- ------cCCCUCC-CCCCCUCCCCcCg -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 29132 0.75 0.321373
Target:  5'- ------cCCCUCC-CCCCCUCCCCcCg -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 40264 0.75 0.328632
Target:  5'- uUUUCUUUCCcCC-CCCCCUCCCUa- -3'
miRNA:   3'- gAAAGAAGGGaGGaGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 150485 0.74 0.336012
Target:  5'- ------cCCCcCCUCCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.