Results 81 - 100 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 24976 | 0.74 | 0.336012 |
Target: 5'- ------cCCCcCCUCCCCCUCCCCc- -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 150522 | 0.74 | 0.358872 |
Target: 5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 80411 | 0.74 | 0.358872 |
Target: 5'- --gUCUgcccaUCCCUUCUUUCCCUCCCCg- -3' miRNA: 3'- gaaAGA-----AGGGAGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 119621 | 0.74 | 0.358872 |
Target: 5'- ----gUUCCCgCCgacCCCCUUCCCCUCg -3' miRNA: 3'- gaaagAAGGGaGGa--GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131666 | 0.74 | 0.358872 |
Target: 5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3' miRNA: 3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6157 | 0.74 | 0.358872 |
Target: 5'- cCUUUCcgCCCUCuCUCCCCg-CCCCUg -3' miRNA: 3'- -GAAAGaaGGGAG-GAGGGGgaGGGGAg -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 57492 | 0.74 | 0.374705 |
Target: 5'- uCUUUCUcCCCagcgUUCUCCCUCUCCCC-Ca -3' miRNA: 3'- -GAAAGAaGGG----AGGAGGGGGAGGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133301 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133353 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133405 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 116036 | 0.73 | 0.391005 |
Target: 5'- ------nCCC-CCgcgCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGaGGa--GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133509 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7793 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7845 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7897 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8026 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133457 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 118471 | 0.73 | 0.391005 |
Target: 5'- -cUUUUUCCCcuUCCUCCCCCaaacCCCCa- -3' miRNA: 3'- gaAAGAAGGG--AGGAGGGGGa---GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133613 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 133561 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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