Results 21 - 40 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 6311 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6337 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6363 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6389 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6415 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6441 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6467 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6493 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6519 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6545 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6571 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6597 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6623 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6649 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6675 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6701 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6727 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6753 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6779 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6805 | 0.76 | 0.286882 |
Target: 5'- ---cCUUCCCUUCcCCCCUUCCCCg- -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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