Results 41 - 60 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 6859 | 0.69 | 0.625798 |
Target: 5'- -------gCCUCCUUCCCCUUCCCg- -3' miRNA: 3'- gaaagaagGGAGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 6929 | 0.72 | 0.460609 |
Target: 5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3' miRNA: 3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7001 | 0.68 | 0.695926 |
Target: 5'- ------gUgUUUCUCCUCCUCCCCUCg -3' miRNA: 3'- gaaagaaGgGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7092 | 0.73 | 0.397653 |
Target: 5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3' miRNA: 3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7199 | 1.1 | 0.001419 |
Target: 5'- cCUUUCUUCCCUCCUCCCCCUCCCCUCg -3' miRNA: 3'- -GAAAGAAGGGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7386 | 0.66 | 0.771855 |
Target: 5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3' miRNA: 3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7793 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7845 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7897 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7927 | 0.72 | 0.460609 |
Target: 5'- ------gCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaagaaGGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 7975 | 0.75 | 0.307215 |
Target: 5'- ---cCUcgCCCUcCCUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGA-GGAGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8026 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8078 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8092 | 0.67 | 0.763504 |
Target: 5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3' miRNA: 3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8130 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 8796 | 0.73 | 0.40776 |
Target: 5'- -------gCCUCCUCCCCCUCCCg-- -3' miRNA: 3'- gaaagaagGGAGGAGGGGGAGGGgag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 9796 | 0.71 | 0.526519 |
Target: 5'- --cUCUUCCUUcCCUCggUCCCUCCCCc- -3' miRNA: 3'- gaaAGAAGGGA-GGAG--GGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 9888 | 0.76 | 0.286882 |
Target: 5'- -cUUCUUUCCUCCuuUCCCCCcCCCCcCg -3' miRNA: 3'- gaAAGAAGGGAGG--AGGGGGaGGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 9946 | 0.7 | 0.565745 |
Target: 5'- --cUCUUgCCUCCgguccaacgCuCCCCUCCCCa- -3' miRNA: 3'- gaaAGAAgGGAGGa--------G-GGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 10593 | 0.67 | 0.744628 |
Target: 5'- ------cCCCgCCUCUUCCUCCCCgUCg -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGAGGGG-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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