miRNA display CGI


Results 61 - 80 of 218 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 3' -58.7 NC_004812.1 + 15801 0.73 0.399326
Target:  5'- uUUUCcaUUUCCgCCUCCCCaUCCCCUCc -3'
miRNA:   3'- gAAAG--AAGGGaGGAGGGGgAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 16952 0.71 0.526519
Target:  5'- --aUCaUCgCCaUCCUCuCCCCUgCCCCUCu -3'
miRNA:   3'- gaaAGaAG-GG-AGGAG-GGGGA-GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 24327 0.66 0.806834
Target:  5'- aCUUUCUUaCCC-CC-CCCCCaccaccacacaCCCUCg -3'
miRNA:   3'- -GAAAGAA-GGGaGGaGGGGGag---------GGGAG- -5'
21559 3' -58.7 NC_004812.1 + 24976 0.74 0.336012
Target:  5'- ------cCCCcCCUCCCCCUCCCCc- -3'
miRNA:   3'- gaaagaaGGGaGGAGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 24995 0.91 0.029172
Target:  5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3'
miRNA:   3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 29047 0.67 0.744628
Target:  5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3'
miRNA:   3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 29132 0.75 0.321373
Target:  5'- ------cCCCUCC-CCCCCUCCCCcCg -3'
miRNA:   3'- gaaagaaGGGAGGaGGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 29629 0.92 0.02481
Target:  5'- -cUUCUcUCCCUCCUCCCCCUCCCCa- -3'
miRNA:   3'- gaAAGA-AGGGAGGAGGGGGAGGGGag -5'
21559 3' -58.7 NC_004812.1 + 29656 0.67 0.735043
Target:  5'- ---cCUUCUCUCCcCCgCCCaUCCCCg- -3'
miRNA:   3'- gaaaGAAGGGAGGaGG-GGG-AGGGGag -5'
21559 3' -58.7 NC_004812.1 + 33057 0.67 0.715623
Target:  5'- cCUUUUgacggCCCcgCCUCCgccccgCCCUCUCCUCc -3'
miRNA:   3'- -GAAAGaa---GGGa-GGAGG------GGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 33134 0.71 0.526519
Target:  5'- gCUUUCgcgcCCCUCC-CUCUCUCCCCcCg -3'
miRNA:   3'- -GAAAGaa--GGGAGGaGGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 34054 0.69 0.625798
Target:  5'- ---gCUcCCCUCCgCCCCC-CCCCg- -3'
miRNA:   3'- gaaaGAaGGGAGGaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 34101 0.68 0.695926
Target:  5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3'
miRNA:   3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 35026 0.68 0.655981
Target:  5'- --aUCcUCCCUCggCCCCCgCCCCg- -3'
miRNA:   3'- gaaAGaAGGGAGgaGGGGGaGGGGag -5'
21559 3' -58.7 NC_004812.1 + 37903 0.68 0.695926
Target:  5'- ------gUgUUUCUCCUCCUCCCCUCg -3'
miRNA:   3'- gaaagaaGgGAGGAGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 37993 0.73 0.397653
Target:  5'- cCUUUUUUUCCUCucugucuCUCCCCCUcggacccccaccgCCCCUCu -3'
miRNA:   3'- -GAAAGAAGGGAG-------GAGGGGGA-------------GGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 38100 1.1 0.001419
Target:  5'- cCUUUCUUCCCUCCUCCCCCUCCCCUCg -3'
miRNA:   3'- -GAAAGAAGGGAGGAGGGGGAGGGGAG- -5'
21559 3' -58.7 NC_004812.1 + 38287 0.66 0.771855
Target:  5'- -gUUCUUUCCcCCUCCgCCgcucucucacggaCUCCCCUa -3'
miRNA:   3'- gaAAGAAGGGaGGAGG-GG-------------GAGGGGAg -5'
21559 3' -58.7 NC_004812.1 + 38993 0.67 0.763504
Target:  5'- ---gCggCCCgcgCCgccCCCCCUCCCC-Cg -3'
miRNA:   3'- gaaaGaaGGGa--GGa--GGGGGAGGGGaG- -5'
21559 3' -58.7 NC_004812.1 + 39697 0.73 0.40776
Target:  5'- -------gCCUCCUCCCCCUCCCg-- -3'
miRNA:   3'- gaaagaagGGAGGAGGGGGAGGGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.